View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_24 (Length: 277)
Name: NF6099_low_24
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 34974536 - 34974274
Alignment:
| Q |
1 |
attagttatgtattagatgtagttagtgtaccaaaacaaattatnnnnnnnn-tgactggcgcttgatgcttgtcggtgttagttttataggataggatt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
34974536 |
attagttatgtattagatgtagttagtgtaccaaaacaaattataaaaaaaaatgactagtgcttgatgcttgtcggtgttagttttataggataggatt |
34974437 |
T |
|
| Q |
100 |
tgaactccgccatacagtgtcggattatgtaatattttgattaactaaggaattggatttttgaaataaattacctcttactctcgtcatatccaatcag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34974436 |
tgaactccgccatacagtgtcggattatgtaatattttgattaactaaggaattggatttttgaaataaattacctcttactctcgtcatatccaatcag |
34974337 |
T |
|
| Q |
200 |
ctaatgtcaacaatttttattttctttacataatacataacacaataaaagaacactgaatga |
262 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34974336 |
ctaatgtcaaccatttttattttctttacataatacataacacaataaaagaacactgaatga |
34974274 |
T |
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