View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_29 (Length: 251)
Name: NF6099_low_29
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28476275 - 28476512
Alignment:
| Q |
1 |
cattttattcactatacctttacttagatcatccacagctttttgtgtcttcttatttatatcatcacccattttacctaaacatttctcacgctcagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28476275 |
cattttattcactatacctttacttagatcatccacagctttttgtgtcttcttatttatatcatcacccattttacctaaacatttctcaagctcagca |
28476374 |
T |
|
| Q |
101 |
acccttaatctttcagcataagcccttaatttcttaatggtaggaacagtttctaatgagtctctccaagcttcaaattgtcccgattcttcgccgatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28476375 |
acccttaatctttcagcataagcccttaatttcttaatggttggaacagtttctaatgagtctctccaagcttcaaattgtcccgattcttcgccgatga |
28476474 |
T |
|
| Q |
201 |
tcacttgtgcttccattgcttttcttagcctatcctct |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28476475 |
tcacttgtgcttccattgcttttcttagcctatcctct |
28476512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 51958354 - 51958142
Alignment:
| Q |
26 |
agatcatccacagctttttgtgtcttcttatttatatcatcacccattttacctaaacatttctcacgctcagcaacccttaatctttcagcataagccc |
125 |
Q |
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||||||||||||||||| | |||||||| |||||||||||||| ||||| || ||||||||| ||||||||||||| | ||||||||||| || | |
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| T |
51958354 |
agatcatccacagctttccgcgtcttctttgagatatcatcacccatcttacccaagcatttctcaagctcagcaaccctgatcctttcagcataggctc |
51958255 |
T |
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| Q |
126 |
ttaatttcttaatggtaggaacagtttctaatgagtctctccaagcttcaaattgtcccgattcttcgccgatgatcacttgtgcttccattgcttttct |
225 |
Q |
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| T |
51958254 |
tcaatttttttatggtaggaacagtttccagtgagtctctccaagcttcaaattgtttcaactcttcaccaatgatcgcctgcgcttccattgcttttct |
51958155 |
T |
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| Q |
226 |
tagcctatcctct |
238 |
Q |
| |
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|||| ||||||| |
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| T |
51958154 |
aagccgatcctct |
51958142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 36829154 - 36829086
Alignment:
| Q |
110 |
ctttcagcataagcccttaatttcttaatggtaggaacagtttctaatgagtctctccaagcttcaaat |
178 |
Q |
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|||||| ||||||| || ||||||||||| |||||||||||||| | |||||| |||| || |||||| |
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| T |
36829154 |
ctttcaacataagctctaaatttcttaatagtaggaacagtttcaagagagtctttccacgcctcaaat |
36829086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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