View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_3 (Length: 605)
Name: NF6099_low_3
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 10 - 589
Target Start/End: Original strand, 30277439 - 30278009
Alignment:
| Q |
10 |
catcatcattattaaaccaaaacatatattatgaaacatgttgaagtgatgattatgttatttataaaagaaaatgaattatatatgaaagtataccctt |
109 |
Q |
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| T |
30277439 |
catcatcattattaagccaaaacatatattatgaaacatgttgaagtgatgattatgttatttataaaataaaatgaattatatatgaaagtataccctt |
30277538 |
T |
|
| Q |
110 |
ccagtgatggattcaatatcaagtttggcattgtcatcaggttgatcaatactgttattagaattagaaagtgagaggacggaaaccacgtcgtcggagc |
209 |
Q |
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| T |
30277539 |
cctgtgatggattcaatatctagtttggcattgtcatcaggtcgatcaatactgttattagaattagaaagtgagaggacggaaaccacgtcgtcggagc |
30277638 |
T |
|
| Q |
210 |
tcggctctgaagagtgtatcgagtttcgaggctccgggagtgagtggtctctgaaccggaacctgggagcagatgaagattccatttgcatattagcaat |
309 |
Q |
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| T |
30277639 |
tcggctctgaagagtgtatcgagtttcgaggctccgggagtgagtggtctctgaaccggaacctgggagcagatgaagattccatttgcatattagcaat |
30277738 |
T |
|
| Q |
310 |
gannnnnnnggtgttaatgaaaagtgaagaaagaaattcattatatggttttttgaaggttctgttcctaggttgttttataagacatgggtatttccgc |
409 |
Q |
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| T |
30277739 |
gatttttttggtgttaatgaaaagtgaagaaagaaattcattatatggttttttgaaggttctgttcctaggttgttttataagacatgggtatttccgc |
30277838 |
T |
|
| Q |
410 |
tgaggtttatttcattgtaagaatcaatacttgttcattgatatattcgtcaattaacaactgcttttgttttatattttgcatgtacatgtcctttgtt |
509 |
Q |
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| T |
30277839 |
tgaggcttatttcattgtaagaatcaatacttgttcattgatatattcgtcaattaacaactgcttttgttttatattttgcatgtacatgtcctttgtt |
30277938 |
T |
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| Q |
510 |
ttattctacgtccattttgtattctactctactcatgtgtgtctgtcttattctgtgtctgcatgaggatagaatgtttt |
589 |
Q |
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| T |
30277939 |
ttattctacgtccattttgtattctac---------gtgtgtctgtcttattctgtgtctgcatgaggatagaatgtttt |
30278009 |
T |
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