View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_32 (Length: 240)
Name: NF6099_low_32
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 41079984 - 41080194
Alignment:
| Q |
19 |
ccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagcttccatataccccaacaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41079984 |
ccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagcttccatataccccaacaca |
41080083 |
T |
|
| Q |
119 |
taccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatctaaactcatcccaattccat |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080084 |
taccacaaactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatctaaactcatcccaattccat |
41080183 |
T |
|
| Q |
219 |
ctatctctgct |
229 |
Q |
| |
|
||||| ||||| |
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| T |
41080184 |
ctatcactgct |
41080194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 23072894 - 23073097
Alignment:
| Q |
26 |
caactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagcttccatataccccaacacataccaca |
125 |
Q |
| |
|
||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||| || | |||||| || |||||||| ||||| ||||||||||||| |
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| T |
23072894 |
caactattgcatttaaatccagcaccaaagcttatcataaatactctatcacctttcttgagcctcttttttgcttccatgtaccctaacacataccaca |
23072993 |
T |
|
| Q |
126 |
aactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatctaaactcatcccaattccatctatctc |
225 |
Q |
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| ||||| || || |||||||| || | ||||| || ||| ||||| || || || ||||| ||| | | |||||||||||| ||||||||||| ||| | |
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| T |
23072994 |
agctactagcagaagtgttaccgaaacgatgtagtgtcatccttgcaggctcaagatcatattcacttaaatctaaactcattccaattccatcaatcac |
23073093 |
T |
|
| Q |
226 |
tgct |
229 |
Q |
| |
|
|||| |
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|
| T |
23073094 |
tgct |
23073097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 23077499 - 23077702
Alignment:
| Q |
26 |
caactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagcttccatataccccaacacataccaca |
125 |
Q |
| |
|
||||| ||||||||||| |||||||| || |||||||| || ||||| ||||||||||| | |||||| || |||||||| ||||| ||||||||||||| |
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| T |
23077499 |
caactattgcatttaaatccagcaccaaagcttatcataaaaactctatcacctttttttagcctctttttggcttccatgtaccctaacacataccaca |
23077598 |
T |
|
| Q |
126 |
aactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatctaaactcatcccaattccatctatctc |
225 |
Q |
| |
|
|||||| || || ||||||||||| | ||||| || ||| ||||| || || || ||||| ||| | |||||||||||| | |||| |||||| ||| | |
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|
| T |
23077599 |
aactaccagcagaagtgttaccaaaacgatgtagtgtcatccttgcaggctcaagatcatattcacttagatctaaactctttccaactccatcaatcac |
23077698 |
T |
|
| Q |
226 |
tgct |
229 |
Q |
| |
|
|||| |
|
|
| T |
23077699 |
tgct |
23077702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 23111443 - 23111240
Alignment:
| Q |
26 |
caactgttgcatttaaagccagcacctaaacttatcatcaatactctctcaccttttttcaacctcttcttagcttccatataccccaacacataccaca |
125 |
Q |
| |
|
||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||| || | |||||| || |||||||| ||||| ||||||||||||| |
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|
| T |
23111443 |
caactattgcatttaaatccagcaccaaagcttatcataaatactctatcacctttcttgagcctcttttttgcttccatgtaccctaacacataccaca |
23111344 |
T |
|
| Q |
126 |
aactacttgctgatgtgttaccaaatctatgtaatgacattcttgctggttctaggtcataatcattcagatctaaactcatcccaattccatctatctc |
225 |
Q |
| |
|
| ||||| || || |||||||| || | ||||| || ||| ||||| || || || ||||| ||| | | |||||||||||| ||||||||||| ||| | |
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|
| T |
23111343 |
agctactagcagaagtgttaccgaaacgatgtagtgtcatccttgcaggctcaagatcatattcacttaaatctaaactcattccaattccatcaatcac |
23111244 |
T |
|
| Q |
226 |
tgct |
229 |
Q |
| |
|
|||| |
|
|
| T |
23111243 |
tgct |
23111240 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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