View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6099_low_33 (Length: 240)

Name: NF6099_low_33
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6099_low_33
NF6099_low_33
[»] chr1 (3 HSPs)
chr1 (19-240)||(39770766-39770987)
chr1 (48-240)||(39755845-39756037)
chr1 (48-240)||(39761199-39761391)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 39770987 - 39770766
Alignment:
Q  19 agtacttcatagaatttgttgtatatataaactaattaaaaattgaaatgcagagtcaagggcgatagcacaatatattgatcatgagtatgctgataag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39770987 agtacttcatagaatttgttgtatatataaactaattaaaaattgaaatgcagagtcaagggcgataacacaatatattgatcatgagtatgctgataag 39770888  T
Q  119 gggactaagttaacaagcagtgactccaaaaagatggcaataatgagtgtgtggtctgaagtggaaagcctacactacgatcaagtagcatcaatacttg 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39770887 gggactaagttaacaagcagtgactccaagaagatggcaataatgagtgtgtggtctgaagtggaaagcctacactacgatcaagtagcatcaatacttg 39770788  T
Q  219 tttgggaattggggataaagac 240  Q
    ||||||||||||||||||||||    
T  39770787 tttgggaattggggataaagac 39770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 39756037 - 39755845
Alignment:
Q  48 aactaattaaaaattgaaatgcagagtcaagggcgatagcacaatatattgatcatgagtatgctgataaggggactaagttaacaagcagtgactccaa 147  Q
    |||| |||| |||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  39756037 aactgattataaattgaaatgcagagtcaagggccataacacaatatattaatcacgagtatgctgataaggggaccaagctaacaagcagtgactccaa 39755938  T
Q  148 aaagatggcaataatgagtgtgtggtctgaagtggaaagcctacactacgatcaagtagcatcaatacttgtttgggaattggggataaagac 240  Q
     ||| ||||||||||| | ||||||||||||||||| ||||  ||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  39755937 gaagttggcaataatgggggtgtggtctgaagtggagagccatcactttgatcaagtagcatcaaaacttgtttgggaattggggataaagac 39755845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 39761391 - 39761199
Alignment:
Q  48 aactaattaaaaattgaaatgcagagtcaagggcgatagcacaatatattgatcatgagtatgctgataaggggactaagttaacaagcagtgactccaa 147  Q
    |||| |||| |||||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  39761391 aactgattataaattgaaatgcagagtcaagggccataacacaatatattaatcacgagtatgctgataaggggaccaagctaacaagcagtgactccaa 39761292  T
Q  148 aaagatggcaataatgagtgtgtggtctgaagtggaaagcctacactacgatcaagtagcatcaatacttgtttgggaattggggataaagac 240  Q
     ||| ||||||||||| | ||||||||||||||||| ||||  ||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  39761291 gaagttggcaataatgggggtgtggtctgaagtggagagccatcactttgatcaagtagcatcaaaacttgtttgggaattggggataaagac 39761199  T

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