View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6099_low_36 (Length: 238)
Name: NF6099_low_36
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37035177 - 37034956
Alignment:
| Q |
1 |
cgatccttggtggataaaagtctatttgggtattttattcacttgtatttgaggcaaaaagttgtattcgg-tttagtaaatgacaataatttcaatttt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
37035177 |
cgatccttggtggataaaagtctatttgggtattttattcacttgtatttgaggcaaaaagttgtattctgatttagtaaatgataataatttcaatttt |
37035078 |
T |
|
| Q |
100 |
tgtcagtgtccattacccactaagtttatctagttcctgatgtagttttacaatcacacagtataaatgtagttatcatgtccaatcttttatttatttt |
199 |
Q |
| |
|
| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37035077 |
tatc-gtgtcctttaccctctaagtttatctagttcctgatgtagttttacaatcacatagtataaatgtagttatcatgtccaatcttttatttatttt |
37034979 |
T |
|
| Q |
200 |
tctcgatcgaacacactatatgt |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37034978 |
tctcgatcgaacacactatatgt |
37034956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 32215324 - 32215291
Alignment:
| Q |
69 |
cggtttagtaaatgacaataatttcaatttttgt |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
32215324 |
cggtttagtaaatgacaagaatttcaatttttgt |
32215291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University