View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_37 (Length: 235)
Name: NF6099_low_37
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 38605455 - 38605236
Alignment:
| Q |
1 |
cacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38605455 |
cacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcatattcttattcactttatcaagtgggc |
38605356 |
T |
|
| Q |
101 |
ttttaggagtaattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatgcgatgttccaactaaatttgatgttgaactaaggcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605355 |
ttttaggagtaattcacatctcatcactacccctgttttggaatctcttgtttcagcaatatgcgatgttccaactaaatttgatgttgaactaaggcag |
38605256 |
T |
|
| Q |
201 |
aatgacatactttttctgtg |
220 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
38605255 |
aatgacatactttttctgtg |
38605236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 40180884 - 40180851
Alignment:
| Q |
118 |
atctcatcactacccctgttttggaatcccttgt |
151 |
Q |
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| T |
40180884 |
atctcatcactacccctgttctggaatcccttgt |
40180851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 44459952 - 44460121
Alignment:
| Q |
3 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt |
102 |
Q |
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|||||| |||||||| ||||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
44459952 |
cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt |
44460051 |
T |
|
| Q |
103 |
---ttaggag------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg |
163 |
Q |
| |
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| T |
44460052 |
ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatg |
44460121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 44467485 - 44467654
Alignment:
| Q |
3 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt |
102 |
Q |
| |
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|||||| |||||||| ||||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
44467485 |
cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt |
44467584 |
T |
|
| Q |
103 |
---ttaggag------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg |
163 |
Q |
| |
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| ||||| | || | |||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
44467585 |
ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatg |
44467654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 34502698 - 34502528
Alignment:
| Q |
3 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcac-tttatcaagtgggct |
101 |
Q |
| |
|
|||||| |||||||| |||||||| |||| | |||||||| | | |||||||||||||||||| |||||||||||||| ||| ||||| ||||||||| |
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| T |
34502698 |
cattttgtactcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttatccacttttatgaagtgggct |
34502599 |
T |
|
| Q |
102 |
tttaggag---------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg |
163 |
Q |
| |
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| ||||| | || ||||||||| ||||||| |||| ||||||||||||||||||||||||| |
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| T |
34502598 |
tggaggaggaggaacacttataaacatctcattactacccttgttctggaatcccttgtttcagcaatatg |
34502528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 44459275 - 44459420
Alignment:
| Q |
19 |
ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca |
118 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||||||| |||||||||||||| ||||||| |||| || || | || ||| | |
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| T |
44459275 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
44459374 |
T |
|
| Q |
119 |
tctcatcactacccctgttttggaatcccttgtttcagcaatatgc |
164 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
44459375 |
cctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44459420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 44466808 - 44466953
Alignment:
| Q |
19 |
ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca |
118 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||||||| |||||||||||||| ||||||| |||| || || | || ||| | |
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| T |
44466808 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
44466907 |
T |
|
| Q |
119 |
tctcatcactacccctgttttggaatcccttgtttcagcaatatgc |
164 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
44466908 |
cctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44466953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 46358846 - 46358991
Alignment:
| Q |
19 |
ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca |
118 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||||||| |||||||||||||| ||||||| |||| || || | || ||| | |
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| T |
46358846 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
46358945 |
T |
|
| Q |
119 |
tctcatcactacccctgttttggaatcccttgtttcagcaatatgc |
164 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| ||||||| |
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|
| T |
46358946 |
cctcatcactacccctgttctggaatcccttgtttcagaaatatgc |
46358991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 410692 - 410732
Alignment:
| Q |
124 |
tcactacccctgttttggaatcccttgtttcagcaatatgc |
164 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||||||||| |
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|
| T |
410692 |
tcactacccctgttctggagtcccttatttcagcaatatgc |
410732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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