View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_38 (Length: 231)
Name: NF6099_low_38
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_38 |
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| [»] scaffold1683 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 39770489 - 39770663
Alignment:
| Q |
53 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagctacccaagcactaacatatggtcttgattcaaacaatttcttg |
152 |
Q |
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| T |
39770489 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagccacccaagcactaacataaggtcttgattcaaacaatttcttg |
39770588 |
T |
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| Q |
153 |
ctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacctcccaag |
227 |
Q |
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| T |
39770589 |
ctctgtgacttcatcaagtaataaagggagggtaagtgatgcagatccaccaaggtgaaagagtcacctcccaag |
39770663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 41527339 - 41527513
Alignment:
| Q |
53 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagctacccaagcactaacatatggtcttgattcaaacaatttcttg |
152 |
Q |
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| T |
41527339 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttccagtgatatcagccacccaagcaataacataaggtcgtgattcaaacactttcttg |
41527438 |
T |
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| Q |
153 |
ctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacctcccaag |
227 |
Q |
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| T |
41527439 |
ctttgtgacttcatcaagtaatgaagggagggtaagtgatgcaaatccaccaaggtgaaagagtcacctcccaag |
41527513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 39755568 - 39755738
Alignment:
| Q |
53 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagctacccaagcactaacatatggtcttgattcaaacaatttcttg |
152 |
Q |
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| T |
39755568 |
ttaattaggtatcatggcaaggacttcagaccaagctggtcttgcagtgatatcagccacccaagcactaacatgaggtcttgattcaaaaagcttcttg |
39755667 |
T |
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| Q |
153 |
ctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacctcc |
223 |
Q |
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| T |
39755668 |
ctttgtgacttcatcaagtaatgaagagaaggtaaatgatgcaaatccaccaaggtgaaagagtcacctcc |
39755738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 39760922 - 39761092
Alignment:
| Q |
53 |
ttaattaggtatcatggcaaggactttagaccaagctggtcttgcagtgatatcagctacccaagcactaacatatggtcttgattcaaacaatttcttg |
152 |
Q |
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| T |
39760922 |
ttaattaggtatcatggcaaggacttcagaccaagctggtcttgcagtgatatcagccacccaagcactaacatgaggtcttgattcaaaaagcttcttg |
39761021 |
T |
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| Q |
153 |
ctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacctcc |
223 |
Q |
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| T |
39761022 |
ctttgtgacttcatcaagtaatgaagagaaggtaaatgatgcaaatccaccaaggtgaaagagtcacctcc |
39761092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39770443 - 39770475
Alignment:
| Q |
1 |
ttgcttaaaccataaaacaacacccaaatatcc |
33 |
Q |
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| T |
39770443 |
ttgcttaaaccataaaacaacacccaaatatcc |
39770475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1683 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 95 - 201
Alignment:
| Q |
121 |
taacatatggtcttgattcaaacaatttcttgctatgtgacttcatcaagtaatgaagggagggtaaatgatgcagatccaccaaggtgaaagagtcacc |
220 |
Q |
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| T |
95 |
taacataaggacgtgattcaaacactttcttgctttgtgacttcatcaagtaatgaagggatggtaagtgatgcaaatccaccaaggtgaaacagtcacc |
194 |
T |
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| Q |
221 |
tcccaag |
227 |
Q |
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||||||| |
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| T |
195 |
tcccaag |
201 |
T |
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