View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_40 (Length: 227)
Name: NF6099_low_40
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_40 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 44634591 - 44634371
Alignment:
| Q |
7 |
ttgttcttataatatcaagcaactgaatctctcaaagtaatttttaacatcattgcttgttcttggagtcacattttttaacaaaattgtttattcaagt |
106 |
Q |
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| T |
44634591 |
ttgttctcataatatcaagcaactgaatctctcaaagtaatttttaacatcattgcttgttcttggagtcacattttttaacaaaattgtttattcaagt |
44634492 |
T |
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| Q |
107 |
gtaccttttgtttaaataactttcttggagaagaggaaagaatgtattatttcgtgagtgcttgaacaaattaattaacaaattgcttactcgatggcat |
206 |
Q |
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| T |
44634491 |
gtaccttttgtttaaataactttcttggagaagaggaaagaatgtattatttcgtgagtgcttgaacaaattaattaacaaattgcttactcgatggcat |
44634392 |
T |
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| Q |
207 |
ggcagatttgagctgggacta |
227 |
Q |
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| T |
44634391 |
ggcagatttgagctgggacta |
44634371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 44622948 - 44622892
Alignment:
| Q |
168 |
ttgaacaaattaattaacaaattgcttactcgatggcatggcagatttgagctgggacta |
227 |
Q |
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| T |
44622948 |
ttgaacaaattaattaacaaattggttact---tggcgtggcaggtttgagttgggacta |
44622892 |
T |
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