View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_6 (Length: 450)
Name: NF6099_low_6
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_6 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 450
Target Start/End: Original strand, 22684112 - 22684556
Alignment:
| Q |
9 |
cagaacctgtggtaaatttaaacaaataaagcattaattaaacactgcaaattcattctctttgtcattataacttgcttcctgcgatagtgagtaacat |
108 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22684112 |
cagaacctgtggtaaatttgaacaaataaagcattaattaaacactgcaaattcattctctttgtcattataacttgcttccagcgatagtgagtaacat |
22684211 |
T |
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| Q |
109 |
attggcaagtaagacaccaatatgctacaaaacttgagcaaatgtggccgcaattgcggtcacaattggcgtttaggagatctctaaaacctt--tattg |
206 |
Q |
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| T |
22684212 |
attggcaagtaagacaccaatatgctacaaaacttgagcaaatgtggctgcaattgcggtcacaattggcgtttaggagatctctaaaacctttatattg |
22684311 |
T |
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| Q |
207 |
cagtcgcaattacagttgtaggctatgatgtgtttctcaaaaagtaacaaactatgaaacaataaagtaaataaaagcaatgcacctaggaagcacttcc |
306 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | |||||| |||||||||||||||| ||||||||||| |
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| T |
22684312 |
cagccgcaattacagttgtaggctatgatgtgtttctcaaaaagtcacaaacaatgaaaaaacatagtaaagaaaagcaatgcacctatgaagcacttcc |
22684411 |
T |
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| Q |
307 |
acaaacaaggacacggcaaatcaacactgacacagacacattgacattggtgaaaaatttgaaaatatgagttaattgaacgtaatcacatgtgttgatc |
406 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
22684412 |
acaaacaaggacacgacaaatcgacactgacacagacacattgacacgggtgaaaaatttgaaaatatgagttaattgaacgtaatcacatgtatcgatc |
22684511 |
T |
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| Q |
407 |
gatgtcgtatccatgtcagacaccagagacgc-tttcatcagaag |
450 |
Q |
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| T |
22684512 |
gatgtcgtatccatgtcagacaccagagacacttttcatcagaag |
22684556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 22695722 - 22695879
Alignment:
| Q |
136 |
caaaacttgagcaaatgtggccgcaattgcggtcacaattggcgtttaggagatctctaaaacctttatt--gcagtcgcaattacagttgtaggctatg |
233 |
Q |
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| T |
22695722 |
caaaactttagcaaatgtggctgcaattgcggtcacaactgccgtagaggagatctctaaaacctttatatcgcagccgcaattacagttgtaggctatg |
22695821 |
T |
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| Q |
234 |
atgtgtttctcaaaaagtaacaaactatgaaacaataaagtaaataaaagcaatgcac |
291 |
Q |
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| T |
22695822 |
atgtgtttctcaaaaagccatatactatgaaaaaacaaagtaaagaaaagcaatgcac |
22695879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 22695522 - 22695596
Alignment:
| Q |
9 |
cagaacctgtggtaaatttaaacaaataaagcattaattaaacactgcaaattc-attctctttgtcattataac |
82 |
Q |
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| T |
22695522 |
cagaacctgcagtaaatttgaacaaataaagcatcaattacacaccgaaaaatctattgtctttgtcattataac |
22695596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 23423271 - 23423220
Alignment:
| Q |
349 |
gacattggtgaaaaatttgaaaatatgagttaattgaacgtaatcacatgtgt |
401 |
Q |
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| T |
23423271 |
gacattggt-aaaaatttgaataaatgatttaattgaaagtaatcacatgtgt |
23423220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 14782896 - 14782856
Alignment:
| Q |
359 |
aaaaatttgaaaatatgagttaattgaacgtaatcacatgt |
399 |
Q |
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| T |
14782896 |
aaaaatttgaaaaaatgaattaattgaacgtaatcacatgt |
14782856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 9198680 - 9198640
Alignment:
| Q |
359 |
aaaaatttgaaaatatgagttaattgaacgtaatcacatgt |
399 |
Q |
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||||||||||||| |||| |||||||||| ||||||||||| |
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| T |
9198680 |
aaaaatttgaaaaaatgaattaattgaacataatcacatgt |
9198640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 10764126 - 10764084
Alignment:
| Q |
359 |
aaaaatttgaaaatatgagttaattgaacgtaatcacatgtgt |
401 |
Q |
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| T |
10764126 |
aaaaatttgaaaaaatgaattaattgaacgtaatcgcatgtgt |
10764084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 26456448 - 26456492
Alignment:
| Q |
354 |
tggtgaaaaatttgaaaatatgagttaattgaacgtaatcacatgt |
399 |
Q |
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|||| ||||||||||||| |||||||||||||||| |||||||||| |
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| T |
26456448 |
tggttaaaaatttgaaaa-atgagttaattgaacgcaatcacatgt |
26456492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 14226973 - 14227036
Alignment:
| Q |
331 |
cactgacacagacacattgacattggtgaaaaatttgaaaatatgagttaattgaacgtaatcac |
395 |
Q |
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| T |
14226973 |
cactgacacatacacattgacatcaat-aaaaatttgaaaaaatgaattaattgaacataatcac |
14227036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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