View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_7 (Length: 429)
Name: NF6099_low_7
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 33 - 410
Target Start/End: Original strand, 36375499 - 36375876
Alignment:
| Q |
33 |
actatttctctatcctgagtaaacatggagcaaagaagcttttctcatcattcagttacaaattttgaataatccattttcatagatctccttatcaaaa |
132 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375499 |
actatttctctatcctgagtaaacatggaacaaagaagcttttctcatcattcagttacaaattttgaataatccattttcatagatctccttatcaaaa |
36375598 |
T |
|
| Q |
133 |
ctctttggagtcagcttctacctttcatcatctcaaatgcctttaacttaagaacatatgctaaatttagcctatagaacatcagttcaattttttaaag |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375599 |
ctctttggagtcagcttctacctttcatcatctcaaatgcctttaacttaagaacatatgctaaatttagcctatagaacatcagttcaattttttaaag |
36375698 |
T |
|
| Q |
233 |
aatgtaatttgtggcacatttacaggttaacactagttttataagcaatttcctccccgtgtgttgcacgggtgttaaaactagtatgtggcacatttac |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375699 |
aatgtaatttgtggcacatttacaggttaacactagttttataagcaatttcctccccgtgtgttgcacgggtgttaaaactagtatgtggcacatttac |
36375798 |
T |
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| Q |
333 |
aggttaaacctatttctattctctcaaaaatatatattaggaatttaggccttcaacaattagcatcatcaaactgaa |
410 |
Q |
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| T |
36375799 |
aggttaaacctatttctattctctcaaaaatatatattaggaatttaggccttcaacaattagcatcatcaaactgaa |
36375876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 390
Target Start/End: Original strand, 36406740 - 36406802
Alignment:
| Q |
328 |
tttacaggttaaacctatttctattctctcaaaaatatatattaggaatttaggccttcaaca |
390 |
Q |
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| T |
36406740 |
tttacaggtcaaacctatttctattctcttaaaaatatctattacaaatttaggccttcaaca |
36406802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 36399212 - 36399284
Alignment:
| Q |
137 |
ttggagtcagcttctacctttcatcatctcaaatgcctttaacttaagaacatatgctaaatttagcctatag |
209 |
Q |
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||||| |||||||||||||||| ||| |||| |||||| |||||||||| ||||||||| || |||||||||| |
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| T |
36399212 |
ttggaatcagcttctacctttcttcaactcagatgcctataacttaagagcatatgctagatctagcctatag |
36399284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 22373138 - 22373090
Alignment:
| Q |
270 |
tttataagcaatttcctccccgtgtgttgcacgggtgttaaaactagta |
318 |
Q |
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| T |
22373138 |
tttataatcatttttctccccgtgcgttgcacgggtgttaaaactagta |
22373090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 22424088 - 22424136
Alignment:
| Q |
270 |
tttataagcaatttcctccccgtgtgttgcacgggtgttaaaactagta |
318 |
Q |
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||||||| || ||| ||||||||| |||||||||||||||||||||||| |
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| T |
22424088 |
tttataatcatttttctccccgtgcgttgcacgggtgttaaaactagta |
22424136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 19720507 - 19720460
Alignment:
| Q |
270 |
tttataagcaatttcctccccgtgtgttgcacgggtgttaaaactagt |
317 |
Q |
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||||||| || ||| ||||||||| ||||||||||||||||||||||| |
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| T |
19720507 |
tttataatcatttttctccccgtgcgttgcacgggtgttaaaactagt |
19720460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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