View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6099_low_9 (Length: 387)
Name: NF6099_low_9
Description: NF6099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6099_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 90 - 374
Target Start/End: Original strand, 16921253 - 16921537
Alignment:
| Q |
90 |
tatctttgattcacaagaagatcttgacaatgacatttcagcttctatagatttcacatcatcacaatcttttctcgttccgccgcttcttccattaaca |
189 |
Q |
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| T |
16921253 |
tatctttgattcacaagaagatcttgacaatgacatttcagcttctatagatttcacatcatcacaatcttttctcgttccgccgcttcttccattaaca |
16921352 |
T |
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| Q |
190 |
actcatcaagaacaacaatttgatttctcttcaacacaaactcatcatctttctggtttgaaagggctaccacaatatcaaactgatcctatttcttcgg |
289 |
Q |
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| T |
16921353 |
actcatcaagaacaacaatttgatttctcttcaacacaaactcatcatctttctggtttgaaagggctaccacaatatcaaactgatcctatttcttcgg |
16921452 |
T |
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| Q |
290 |
cagcgccgcttatgagtgcttcattcccttctgtatttgaagatgattgcatatcttcaattccttcttattctccttcttgttc |
374 |
Q |
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| T |
16921453 |
cagcgccgcttatgagtgcttcattcccttctgtatttgaagatgattgcatatcttcaattccttcttattctccttcttgttc |
16921537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 32553895 - 32553967
Alignment:
| Q |
89 |
ttatctttgattcacaagaagatcttgacaatgacatttcagcttctatagatttcacatcatcacaatcttt |
161 |
Q |
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| T |
32553895 |
ttatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttctcactatcaccatcttt |
32553967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 2656388 - 2656425
Alignment:
| Q |
305 |
gtgcttcattcccttctgtatttgaagatgattgcata |
342 |
Q |
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|||||| |||||||||||||||||||||| |||||||| |
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| T |
2656388 |
gtgctttattcccttctgtatttgaagattattgcata |
2656425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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