View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6100_high_2 (Length: 234)
Name: NF6100_high_2
Description: NF6100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6100_high_2 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 42083376 - 42083603
Alignment:
| Q |
7 |
acatcatcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccataaaagctaggc |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083376 |
acatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccataaaagctaggc |
42083475 |
T |
|
| Q |
107 |
ttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccacaagtactgcgcgtacaccaacaaccggaaagccggctagaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083476 |
ttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccacaagtactgcgcgtacaccaacaaccggaaagccggctagaac |
42083575 |
T |
|
| Q |
207 |
accattgctcatgcacttttccaatcct |
234 |
Q |
| |
|
||||||||||||||| |||||||||||| |
|
|
| T |
42083576 |
accattgctcatgcaattttccaatcct |
42083603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 42086903 - 42087120
Alignment:
| Q |
17 |
aatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
42086903 |
aatgttcttcaggagtaacaacttcaactttcattataggttcaagcattctcggtccggcttttcttattccttcccgaaaagctcctcttgctgccaa |
42087002 |
T |
|
| Q |
117 |
ctggaatgccttcacacttgaatccacatcatggtaagtactatccacaagtactgcgcgtacaccaacaaccggaaagccggctagaacaccattgctc |
216 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||| || ||||||||||||||| |||||| | ||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
42087003 |
ctggaaagccaacacacttgaatctacatcatggtaagaaccatccacaagtactgcacgtacatcgacaactggaaatccggccagaacaccattgctc |
42087102 |
T |
|
| Q |
217 |
atgcacttttccaatcct |
234 |
Q |
| |
|
|| |||| |||||||||| |
|
|
| T |
42087103 |
atacactcttccaatcct |
42087120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 29242508 - 29242409
Alignment:
| Q |
53 |
taggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggta |
152 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||| |||| || | |||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
29242508 |
taggttcaagcattttcggtccggcttttcttattccttcttgaaaaactcgtcttgctgccaactgaaa-gccaacacacttgaatccacatcatggta |
29242410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University