View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6101_high_10 (Length: 318)

Name: NF6101_high_10
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6101_high_10
NF6101_high_10
[»] chr4 (1 HSPs)
chr4 (13-306)||(37224336-37224629)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 37224629 - 37224336
Alignment:
Q  13 taggacatgatggtttgtattctaaattatccnnnnnnnngtgcggttgtagggaaacatccgcagagtacagcagaaaaacatggaaattaggtagaga 112  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37224629 taggacatgatggtttgtattctaaattatccttttttttgtgcggttgtagggaaacatccgcagagtacagcagaaaaacatggaaattaggtagaga 37224530  T
Q  113 acttctcaaaggaatatcagaaagtttgggtttggaagtcaactatatagacaaaacaatgaatctagattctggtttacaaatgttggcagcaaatctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37224529 acttctcaaaggaatatcagaaagtttgggtttggaagtcaactatatagacaaaacaatgaatctagattctggtttacaaatgttggcagcaaatctt 37224430  T
Q  213 tatcctccttgtcctcaacctgagcttgcaatgggaatgcccccacattccgatcatggcctcttgaacctcctcatccagaatggagttagtg 306  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37224429 tatcctccttgtcctcaacctgatcttgcaatgggaatgcccccacattccgatcatggcctcttgaacctcctcatccagaatggagttagtg 37224336  T

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