View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6101_high_17 (Length: 240)
Name: NF6101_high_17
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6101_high_17 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 59605 - 59647
Alignment:
| Q |
95 |
agaggcataattcatgtttatttaaactttcaatcaaccaaac |
137 |
Q |
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| T |
59605 |
agaggcataattcatgtttatttaaactttcaatcaaccaaac |
59647 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 38260848 - 38260890
Alignment:
| Q |
95 |
agaggcataattcatgtttatttaaactttcaatcaaccaaac |
137 |
Q |
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| T |
38260848 |
agaggcacaattcatgtttatttaaactttcaatcaaccaaac |
38260890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 24845935 - 24845894
Alignment:
| Q |
95 |
agaggcataattcatgtttatttaaactttcaatcaaccaaa |
136 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24845935 |
agagacataattcatgtttatttaaactttcaatcaaccaaa |
24845894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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