View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6101_high_2 (Length: 571)
Name: NF6101_high_2
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6101_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Complemental strand, 4977335 - 4976780
Alignment:
| Q |
17 |
agtagtagtattcttgttgtattggcttttcaagctctataattgatgcaagaaaatgaagaagaaaaattaatggtggaagtatata--gattgaaaaa |
114 |
Q |
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| T |
4977335 |
agtagtagtattcttgttgtattggcttttcaagctctataattgatgcaagaaaatgaagaagaaaaattaatggtggaagtatatatagattgaaaaa |
4977236 |
T |
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| Q |
115 |
gtacattataaaaatcatgattatcagtttcaatagannnnnnnctagtatgaattgaagtgctcaaagacacataactaagagatttttaatgtgatga |
214 |
Q |
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| T |
4977235 |
gtatattataaaaatcatgattatcagtttcaatagatttttttctagtatgaattaaagtattcaaagacacataactaagagatttttaatgtgatga |
4977136 |
T |
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| Q |
215 |
aattgaattttgaactattatgatagcaaaaggagaaagtgaataaaatatatgtcctcttagggagtttgagaagtgttggagaagaagaagcaataat |
314 |
Q |
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| T |
4977135 |
aattgaattttgaactattatgatagcaaaag-agaaagtgaataaaatctatgtcctcttaggaagtttgagaagtgttggagaagaagaagcaataat |
4977037 |
T |
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| Q |
315 |
gtcggttcaatattacatcatcaatctattttggagtgacatgagagtgtacatagtcagaattgtgtgtaaaattaaagatggtttatgttttagggga |
414 |
Q |
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| T |
4977036 |
gtcggttcaatattacatcatcaatctattttggagtgacatgagagtgtacatagtcagaattgtgtgtaaaattaaagatggtttatgtttcagggga |
4976937 |
T |
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| Q |
415 |
cacggtgcacatgcaaacataaacagtgagaaaacgtgatacaagagaagggtacgtaatggatgatttcatcttacacgcaagatttatattatgagac |
514 |
Q |
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| T |
4976936 |
cacggtgcacatgcaaacataaacagtgagaaaacgtgacacaagagaagggtacgtaatggatgatttcatcttacacgcaagatttatattatgagac |
4976837 |
T |
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| Q |
515 |
aaatatccatttcnnnnnnngaggtgttaactcatattcaagagtaagatatgttgc |
571 |
Q |
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| T |
4976836 |
aaatatccatttcaaaaaaagaggtgttaactcatattcaagagtaagatatgttgc |
4976780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Complemental strand, 4995242 - 4994687
Alignment:
| Q |
17 |
agtagtagtattcttgttgtattggcttttcaagctctataattgatgcaagaaaatgaagaagaaaaattaatggtggaagtatata--gattgaaaaa |
114 |
Q |
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| T |
4995242 |
agtagtagtattcttgttgtattggcttttcaagctctataattgatgcaagaaaatgaagaagaaaaattaatggtggaagtatatatagattgaaaaa |
4995143 |
T |
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| Q |
115 |
gtacattataaaaatcatgattatcagtttcaatagannnnnnnctagtatgaattgaagtgctcaaagacacataactaagagatttttaatgtgatga |
214 |
Q |
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| T |
4995142 |
gtatattataaaaatcatgattatcagtttcaatagatttttttctagtatgaattaaagtattcaaagacacataactaagagatttttaatgtgatga |
4995043 |
T |
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| Q |
215 |
aattgaattttgaactattatgatagcaaaaggagaaagtgaataaaatatatgtcctcttagggagtttgagaagtgttggagaagaagaagcaataat |
314 |
Q |
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| T |
4995042 |
aattgaattttgaactattatgatagcaaaag-agaaagtgaataaaatctatgtcctcttaggaagtttgagaagtgttggagaagaagaagcaataat |
4994944 |
T |
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| Q |
315 |
gtcggttcaatattacatcatcaatctattttggagtgacatgagagtgtacatagtcagaattgtgtgtaaaattaaagatggtttatgttttagggga |
414 |
Q |
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| T |
4994943 |
gtcggttcaatattacatcatcaatctattttggagtgacatgagagtgtacatagtcagaattgtgtgtaaaattaaagatggtttatgtttcagggga |
4994844 |
T |
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| Q |
415 |
cacggtgcacatgcaaacataaacagtgagaaaacgtgatacaagagaagggtacgtaatggatgatttcatcttacacgcaagatttatattatgagac |
514 |
Q |
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| T |
4994843 |
cacggtgcacatgcaaacataaacagtgagaaaacgtgacacaagagaagggtacgtaatggatgatttcatcttacacgcaagatttatattatgagac |
4994744 |
T |
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| Q |
515 |
aaatatccatttcnnnnnnngaggtgttaactcatattcaagagtaagatatgttgc |
571 |
Q |
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| T |
4994743 |
aaatatccatttcaaaaaaagaggtgttaactcatattcaagagtaagatatgttgc |
4994687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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