View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6101_high_22 (Length: 228)
Name: NF6101_high_22
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6101_high_22 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6517381 - 6517611
Alignment:
| Q |
1 |
caattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaa---------gggtgttaag |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6517381 |
caattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatggataaaagggtgttaag |
6517480 |
T |
|
| Q |
92 |
gtttgtgtggtaggtgctgttggttgtgtagttaccaaaatcgttatcttgatcgcagaagtattggaaattcttaccttggtcaacgtctgctgtggtg |
191 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6517481 |
gtttgtgtggtaggtgctgttggttgtgtagataccaccatcgttattttgatcacagaagtattggaaattcttaccttggtcaacgtctgctgtggtg |
6517580 |
T |
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| Q |
192 |
agttgagatgtgaaaatgaatatgagaagga |
222 |
Q |
| |
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|||||||||||||||||||| |||||||||| |
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| T |
6517581 |
agttgagatgtgaaaatgaaaatgagaagga |
6517611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6512982 - 6513212
Alignment:
| Q |
1 |
caattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga---------agggtgttaag |
91 |
Q |
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|||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
6512982 |
caatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaag |
6513081 |
T |
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| Q |
92 |
gtttgtgtggtaggtgctgttggttgtgtagttaccaaaatcgttatcttgatcgcagaagtattggaaattcttaccttggtcaacgtctgctgtggtg |
191 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| || || ||| | | || || || ||||||||| |
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| T |
6513082 |
gtttttgtgataggtgctgttggttgtgtagttaccaccatcgttattttgatcacagaagtattgcaatttgttatcattgttaatgttggctgtggtg |
6513181 |
T |
|
| Q |
192 |
agttgagatgtgaaaatgaatatgagaagga |
222 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
6513182 |
agttgagatgtgaaaatgaatatgagaagga |
6513212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6521654 - 6521424
Alignment:
| Q |
1 |
caattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga---------agggtgttaag |
91 |
Q |
| |
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|||| |||||||||||||| |||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
6521654 |
caatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaag |
6521555 |
T |
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| Q |
92 |
gtttgtgtggtaggtgctgttggttgtgtagttaccaaaatcgttatcttgatcgcagaagtattggaaattcttaccttggtcaacgtctgctgtggtg |
191 |
Q |
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||||||||||||||||||||| |||| |||||||||| ||| |||| |||||| |||||||||||||| || || | |||| | ||| ||||| |
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| T |
6521554 |
gtttgtgtggtaggtgctgtttgttgggtagttaccaccatcattattttgatcacagaagtattggaatttgtttgcagtgtcagtggtagctatggtg |
6521455 |
T |
|
| Q |
192 |
agttgagatgtgaaaatgaatatgagaagga |
222 |
Q |
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|||||||||||||||||||| |||||||||| |
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| T |
6521454 |
agttgagatgtgaaaatgaaaatgagaagga |
6521424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 6507081 - 6507234
Alignment:
| Q |
1 |
caattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------agaagggtgttaag |
91 |
Q |
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|||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||| || || |
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| T |
6507081 |
caatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgag |
6507180 |
T |
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| Q |
92 |
gtttgtgtggtaggtgctgttggttgtgtagttaccaaaatcgttatcttgatc |
145 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
6507181 |
gtttgtgtggtaggtgctgttggttgtgtagttaccatcatcgttaccttgatc |
6507234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 47713366 - 47713445
Alignment:
| Q |
1 |
caattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga |
80 |
Q |
| |
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|||| ||||||||||||||| ||||| |||||||||| | || ||||||||||||||||||| |||||||||||||| |
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| T |
47713366 |
caatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgaga |
47713445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 47718165 - 47718235
Alignment:
| Q |
6 |
gcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagt |
76 |
Q |
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|||||||||||||| ||||| |||||||||| | || ||||||||||||||||||||| |||||||||| |
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| T |
47718165 |
gcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaagt |
47718235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 6500263 - 6500331
Alignment:
| Q |
12 |
actttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga |
80 |
Q |
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||||||||||||||| ||||| || | || ||||||||||||||||||||| |||||||||||||| |
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| T |
6500263 |
actttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgaga |
6500331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 47745949 - 47746028
Alignment:
| Q |
1 |
caattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga |
80 |
Q |
| |
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|||| ||||||||||| || ||||| |||||||||| | || ||||||||||||||||||| |||||||||||||| |
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| T |
47745949 |
caatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgaga |
47746028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1106 - 1259
Alignment:
| Q |
1 |
caattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------agaagggtgttaag |
91 |
Q |
| |
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|||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||| || || |
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| T |
1106 |
caatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgag |
1205 |
T |
|
| Q |
92 |
gtttgtgtggtaggtgctgttggttgtgtagttaccaaaatcgttatcttgatc |
145 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
1206 |
gtttgtgtggtaggtgctgttggttgtgtagttaccatcatcgttaccttgatc |
1259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 8760 - 8913
Alignment:
| Q |
1 |
caattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------agaagggtgttaag |
91 |
Q |
| |
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|||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||| || || |
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| T |
8760 |
caatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgag |
8859 |
T |
|
| Q |
92 |
gtttgtgtggtaggtgctgttggttgtgtagttaccaaaatcgttatcttgatc |
145 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
8860 |
gtttgtgtggtaggtgctgttggttgtgtagttaccatcatcgttaccttgatc |
8913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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