View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6101_high_3 (Length: 425)

Name: NF6101_high_3
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6101_high_3
NF6101_high_3
[»] chr2 (4 HSPs)
chr2 (210-412)||(33136769-33136971)
chr2 (101-180)||(33136693-33136772)
chr2 (18-105)||(33135424-33135511)
chr2 (195-270)||(18558273-18558348)
[»] chr1 (14 HSPs)
chr1 (182-288)||(35265517-35265623)
chr1 (213-314)||(35228584-35228687)
chr1 (32-271)||(35193052-35193291)
chr1 (213-283)||(35295026-35295096)
chr1 (20-145)||(35203529-35203654)
chr1 (179-288)||(35273046-35273155)
chr1 (194-316)||(35477083-35477207)
chr1 (218-283)||(45534578-45534643)
chr1 (208-288)||(35203398-35203478)
chr1 (20-262)||(35254098-35254340)
chr1 (180-283)||(35222953-35223056)
chr1 (195-284)||(35146144-35146233)
chr1 (67-152)||(45534700-45534785)
chr1 (179-283)||(45526975-45527079)
[»] chr3 (4 HSPs)
chr3 (179-287)||(898643-898751)
chr3 (28-159)||(17663382-17663513)
chr3 (179-284)||(17663518-17663623)
chr3 (179-284)||(19246173-19246278)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 210 - 412
Target Start/End: Original strand, 33136769 - 33136971
Alignment:
Q  210 cgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcattatctaccaatttcttgaa 309  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136769 cgcttctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcattatctaccaatttcttgaa 33136868  T
Q  310 tattaggcttattattaatgactatgctgttcaggaagttgttctagggcttgttatttagcattgtttcctgtgatcctccggcctgcagtcttgtatt 409  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136869 tattaggcttattattaatgactatgctgttcaggaagttattatagggcttgttatttagcattgtttcctgtgatcctccggcctgcagtcttgtatt 33136968  T
Q  410 ttc 412  Q
    |||    
T  33136969 ttc 33136971  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 33136693 - 33136772
Alignment:
Q  101 ctaagtcttttcattctgcggccgattccgacacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgct 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136693 ctaagtcttttcattctgcggccgattccgacacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgct 33136772  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 33135424 - 33135511
Alignment:
Q  18 cattgaggacttgccggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaag 105  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33135424 cattaaggacttgccggaaggatgtattgccgcgatactctctcatacaactccggttgacgccggcagattctctgttgtttctaag 33135511  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 18558273 - 18558348
Alignment:
Q  195 tccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaat 270  Q
    |||||||  ||| |||||||| |||||||| ||||| |||||||| |||||||||||||  ||||| |||||||||    
T  18558273 tccttccattgccaacgctccaaccaaaaaggctctctatctcgccctatctgatcgccccatcatgatcgacaat 18558348  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 35265623 - 35265517
Alignment:
Q  182 tcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggt 281  Q
    |||||||| | |||||||| | ||| ||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||  ||| |||||||||    
T  35265623 tcatctcacactctccttcacttgccaacgctcctaccaaaaaagctctgtatctcgctctctctgatcgtcctatcatcatcgatcatgataaaaaggt 35265524  T
Q  282 attcttc 288  Q
    |||||||    
T  35265523 attcttc 35265517  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 314
Target Start/End: Complemental strand, 35228687 - 35228584
Alignment:
Q  213 tcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcat--tatctaccaatttcttgaat 310  Q
    |||||||||||||| ||| ||| | |||||||||||||||| |||||||||||||||||||||||||||||| ||| |  || || ||||||||| ||||    
T  35228687 tcctaccaaaaaagatctctatattgctctatctgatcgccctatcatcatcgacaatggtaaaaaggtatttttcttcctaactgccaatttctcgaat 35228588  T
Q  311 atta 314  Q
    ||||    
T  35228587 atta 35228584  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 35193291 - 35193052
Alignment:
Q  32 cggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgcggccgattccga 131  Q
    |||||||||| ||| | || ||| ||||||  |||||||||| ||| ||||||||  |||| |||||||| ||| |||| |  ||||| |||||||| ||    
T  35193291 cggaaggatgcatttccgccataatctctcgcacaactccggctgatgccggcagactctccgttgtttccaagactttcctatctgcagccgattctga 35193192  T
Q  132 cacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctt 231  Q
    | | || |||||||  |||||  ||||| || ||||   |||   | ||||||||||| | ||||| |||| ||| || |  ||  |||||||||||||     
T  35193191 cgccgtctggaatcaatttctcccttccgattctcatttcatcgactctatcatctcacactctccatcccttgctaatgtaccatccaaaaaagctctg 35193092  T
Q  232 tatctcgctctatctgatcgccatatcatcatcgacaatg 271  Q
    ||||||||||| ||||||| || |||||||||||||||||    
T  35193091 tatctcgctctctctgatctccctatcatcatcgacaatg 35193052  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 35295026 - 35295096
Alignment:
Q  213 tcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtat 283  Q
    |||||||||||| | |||||||||||| ||||||||||||| ||| ||||| ||| |||||||||||||||    
T  35295026 tcctaccaaaaaggatctttatctcgccctatctgatcgccctataatcattgaccatggtaaaaaggtat 35295096  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 35203654 - 35203529
Alignment:
Q  20 ttgaggacttgccggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgc 119  Q
    ||||||| |||||||||||||| ||| | || || |||||||  |||||||||| ||||||||||||  |||| |||||||| ||| |  ||| ||||||    
T  35203654 ttgaggaattgccggaaggatgcatttccgccattctctctcgcacaactccggctgacgccggcagactctccgttgtttccaagacaattctttctgc 35203555  T
Q  120 ggccgattccgacacggtgtggaatc 145  Q
     |||||||||||| | || |||||||    
T  35203554 cgccgattccgacgccgtctggaatc 35203529  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 288
Target Start/End: Complemental strand, 35273155 - 35273046
Alignment:
Q  179 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 278  Q
    |||| |||||| | |||||||||| | | |||  |||||||||||| | ||| ||||| |||||||||||||||| | ||||||||||  ||| ||||||    
T  35273155 ctattatctcacactctccttcccttaccaacattcctaccaaaaaggatctctatcttgctctatctgatcgccctgtcatcatcgatcatgataaaaa 35273056  T
Q  279 ggtattcttc 288  Q
    ||||||||||    
T  35273055 ggtattcttc 35273046  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 316
Target Start/End: Complemental strand, 35477207 - 35477083
Alignment:
Q  194 ctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcattat 293  Q
    ||||||||  ||| ||| |||| ||||| || ||||| | |||| |||||||||| |||| ||||||||||||||||| | |||||||||||||| ||||    
T  35477207 ctccttccattgccaacactccaaccaagaaggctctctttctcactctatctgaccgccctatcatcatcgacaatgctcaaaaggtattcttctttat 35477108  T
Q  294 --ctaccaatttcttgaatattagg 316  Q
      |  ||||||| ||||||||||||    
T  35477107 aacctccaattttttgaatattagg 35477083  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 45534643 - 45534578
Alignment:
Q  218 ccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtat 283  Q
    ||||||| ||||||||||| |||||||||||||  | |||||||||||||||||| ||||||||||    
T  45534643 ccaaaaaggctctttatcttgctctatctgatcaacctatcatcatcgacaatggcaaaaaggtat 45534578  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 35203478 - 35203398
Alignment:
Q  208 aacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttc 288  Q
    |||| ||| ||||||||| |||| ||||| ||||| ||||||  || ||||||||||||||||| | ||||||||||||||    
T  35203478 aacgttccaaccaaaaaatctctgtatctagctctctctgattcccctatcatcatcgacaatgatcaaaaggtattcttc 35203398  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 35254340 - 35254098
Alignment:
Q  20 ttgaggacttgccggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgc 119  Q
    ||||||| |||||||||| |||| |||| ||||||||||||| ||| |||||  ||||||||| |||| ||||| | || || ||  |||| | ||||||    
T  35254340 ttgaggaattgccggaagaatgtgttgccgcgatactctctcgtaccactccttttgacgccgtcaggctctctctcgtctccaaaactttccgttctgc 35254241  T
Q  120 ggccgattccgacacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgctatcatctcaaattctccttcccatgcaaacgctcctacc 219  Q
     ||| ||||||||   || |||||||  |||||  ||||| || | |||  |||   | || |||||||  | | |||||||| ||| || ||| | |||    
T  35254240 cgccaattccgacgaagtatggaatcaatttctcccttccgattcccaattcatcgacactgtcatctcccaatttccttcccttgccaatgcttccacc 35254141  T
Q  220 aaaaaagctctttatctcgctctatctgatcgccatatcatca 262  Q
    ||||| | ||| |||||||||||||||||| ||| ||||||||    
T  35254140 aaaaaggatctctatctcgctctatctgattgccgtatcatca 35254098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 35223056 - 35222953
Alignment:
Q  180 tatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaag 279  Q
    |||||| ||| | |||||||||  |||||||  |||||| |||||  |||| ||||| || || ||| ||| || ||||||||||||| |||||||||||    
T  35223056 tatcatatcacactctccttcctttgcaaacattcctacaaaaaagtctctctatcttgccctctctaatcaccctatcatcatcgacgatggtaaaaag 35222957  T
Q  280 gtat 283  Q
    ||||    
T  35222956 gtat 35222953  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 35146144 - 35146233
Alignment:
Q  195 tccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtatt 284  Q
    |||||||| ||| |||  ||| |||||||| ||||| ||||||||||| | |||||  | ||||||||||||  ||||| ||||||||||    
T  35146144 tccttcccttgccaacattccaaccaaaaaggctctctatctcgctctctatgatcatcctatcatcatcgatcatggtcaaaaggtatt 35146233  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 45534785 - 45534700
Alignment:
Q  67 actccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgcggccgattccgacacggtgtggaatcgttttct 152  Q
    ||||||||||||||||| || |||||||| || || ||| |||| |||||||| |||  ||||||| | || ||||||| ||||||    
T  45534785 actccggttgacgccggtagattctctgtcgtgtccaagactttccattctgccgccagttccgacgccgtctggaatcattttct 45534700  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 45527079 - 45526975
Alignment:
Q  179 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 278  Q
    ||||||||||| | || ||||| |  ||||| |||||| ||||||| ||||| |||||  | ||||| ||||| | ||||||||||||| |||  |||||    
T  45527079 ctatcatctcacagtcaccttctctagcaaatgctccttccaaaaaggctctctatcttaccctatccgatcgacctatcatcatcgacgatgccaaaaa 45526980  T
Q  279 ggtat 283  Q
    |||||    
T  45526979 ggtat 45526975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 898643 - 898751
Alignment:
Q  179 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 278  Q
    ||||||||||| |||||||||||| ||| |||||||| |||||||| || || ||||||||||| || ||| |||  |||||||||||  |||||  |||    
T  898643 ctatcatctcacattctccttcccttgccaacgctcccaccaaaaaggccctctatctcgctctctccgatagcccaatcatcatcgatcatggtcgaaa 898742  T
Q  279 ggtattctt 287  Q
    |||||||||    
T  898743 ggtattctt 898751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 17663382 - 17663513
Alignment:
Q  28 ttgccggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgcggccgatt 127  Q
    ||||| ||||| || || ||| ||||||| |||  ||||||||||||||||||  ||||| ||||| |  |||| |||||||| | |||||| |||||||    
T  17663382 ttgcctgaagggtgcatcgcgacgatactatcttgtacaactccggttgacgcttgcaggctctctatcctttcaaagtctttccgttctgcagccgatt 17663481  T
Q  128 ccgacacggtgtggaatcgttttctgacttcc 159  Q
    ||||||| || ||| | |||||||||| ||||    
T  17663482 ccgacaccgtctgggaccgttttctgatttcc 17663513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 17663518 - 17663623
Alignment:
Q  179 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 278  Q
    ||||||||| | | ||||||||||  |||||| ||  ||||||||||| ||| ||  | |||||||||||||||| ||||||||||||| | |||| |||    
T  17663518 ctatcatcttacaatctccttccctggcaaacacttttaccaaaaaagatctctacatggctctatctgatcgccctatcatcatcgaccagggtacaaa 17663617  T
Q  279 ggtatt 284  Q
    ||||||    
T  17663618 ggtatt 17663623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 19246173 - 19246278
Alignment:
Q  179 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 278  Q
    ||||||||| | | |||||||| |  |||||| ||  ||||||||||| ||| ||  | |||||||||||||||| ||||||||||||  | |||| |||    
T  19246173 ctatcatcttacaatctccttcactggcaaacacttttaccaaaaaagatctctacatggctctatctgatcgccctatcatcatcgatcagggtacaaa 19246272  T
Q  279 ggtatt 284  Q
    ||||||    
T  19246273 ggtatt 19246278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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