View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6101_high_5 (Length: 405)

Name: NF6101_high_5
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6101_high_5
NF6101_high_5
[»] chr3 (2 HSPs)
chr3 (149-405)||(2221445-2221701)
chr3 (85-126)||(13322980-13323021)
[»] chr7 (3 HSPs)
chr7 (187-286)||(38284820-38284919)
chr7 (330-386)||(38284711-38284767)
chr7 (91-126)||(16072387-16072422)
[»] scaffold0139 (1 HSPs)
scaffold0139 (85-126)||(27681-27722)
[»] scaffold0326 (1 HSPs)
scaffold0326 (91-126)||(18646-18681)
[»] scaffold0193 (1 HSPs)
scaffold0193 (91-126)||(1278-1313)
[»] chr8 (2 HSPs)
chr8 (91-126)||(20008047-20008082)
chr8 (91-126)||(21682019-21682054)
[»] chr6 (1 HSPs)
chr6 (91-126)||(22796883-22796918)
[»] chr1 (1 HSPs)
chr1 (91-126)||(41307971-41308006)
[»] scaffold0309 (1 HSPs)
scaffold0309 (91-125)||(9961-9995)
[»] scaffold0924 (1 HSPs)
scaffold0924 (93-126)||(4053-4086)
[»] scaffold0102 (1 HSPs)
scaffold0102 (85-126)||(39901-39942)
[»] scaffold0001 (1 HSPs)
scaffold0001 (91-123)||(91041-91073)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 149 - 405
Target Start/End: Complemental strand, 2221701 - 2221445
Alignment:
Q  149 gccggcctggccttaaatcttattttgttcccttcccaataagtagagaaatttattaataaatcaatgatacaatgtcaaagtagtgcatcaaagcata 248  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2221701 gccggcctggccttaaatcttattttgctcccttcccaataagtagagaaatttattaataaatcaatgatacaatgtcaaagtagtgcatcaaagcata 2221602  T
Q  249 tgcaccctacatgtacaccagttctcaagatctcaaacgnnnnnnncatcaaaaatatacatatgtaaataaaactcctactaagaacacaccctggaat 348  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2221601 tgcaccctacatgtacaccagttctcaagatctcaaacgaaaaaaacatcaaaaatatacatatgtaaataaaactcctactaagaacacaccctggaat 2221502  T
Q  349 tgaacactcacactgtcaagaggcaagcaacaacactagttcaaaccccttaaaagc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2221501 tgaacactcacactgtcaagaggcaagcaacaacactagttcaaaccccttaaaagc 2221445  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 13322980 - 13323021
Alignment:
Q  85 ttcagtagggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  13322980 ttcaggagggagaccatgtgtttctgagagttactcctatga 13323021  T

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Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 38284919 - 38284820
Alignment:
Q  187 ataagtagagaaatttattaataaatcaatgatacaatgtcaaagtagtgcatcaaagcatatgcaccctacatgtacaccagttctcaagatctcaaac 286  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  38284919 ataagtagagaaattcattattaaatcgatgatacaatgtcaaagtagagcatcaaagcagatgcactctacatgtacaccagttctcaagatctcaaac 38284820  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 38284767 - 38284711
Alignment:
Q  330 taagaacacaccctggaattgaacactcacactgtcaagaggcaagcaacaacacta 386  Q
    ||||||||| ||| | |||||| |||||||||| ||||||||||||| |||||||||    
T  38284767 taagaacactcccggaaattgagcactcacactatcaagaggcaagcgacaacacta 38284711  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 16072387 - 16072422
Alignment:
Q  91 agggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||||| ||||||||||||||||||||||||||||    
T  16072387 agggagatcatgtgtttctgagagttactcctatga 16072422  T

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Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 27722 - 27681
Alignment:
Q  85 ttcagtagggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  27722 ttcaggagggagatcatgtgtttctgagagttactcctatga 27681  T

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Target: scaffold0326 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 18646 - 18681
Alignment:
Q  91 agggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||||| ||||||||||||||||||||||||||||    
T  18646 agggagatcatgtgtttctgagagttactcctatga 18681  T

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Target: scaffold0193 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 1278 - 1313
Alignment:
Q  91 agggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1278 agggagatcatgtgtttctgagagttactcctatga 1313  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 20008082 - 20008047
Alignment:
Q  91 agggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20008082 agggagatcatgtgtttctgagagttactcctatga 20008047  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 21682019 - 21682054
Alignment:
Q  91 agggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||||| ||||||||||||||||||||||||||||    
T  21682019 agggagatcatgtgtttctgagagttactcctatga 21682054  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 22796883 - 22796918
Alignment:
Q  91 agggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||||| ||||||||||||||||||||||||||||    
T  22796883 agggagatcatgtgtttctgagagttactcctatga 22796918  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 41308006 - 41307971
Alignment:
Q  91 agggagaccatgtgtttctgagagttactcctatga 126  Q
    |||||||||||||||||||||| |||||||||||||    
T  41308006 agggagaccatgtgtttctgagggttactcctatga 41307971  T

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Target: scaffold0309 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 9995 - 9961
Alignment:
Q  91 agggagaccatgtgtttctgagagttactcctatg 125  Q
    ||||||| |||||||||||||||||||||||||||    
T  9995 agggagatcatgtgtttctgagagttactcctatg 9961  T

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Target: scaffold0924 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 4086 - 4053
Alignment:
Q  93 ggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||| ||||||||||||||||||||||||||||    
T  4086 ggagatcatgtgtttctgagagttactcctatga 4053  T

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Target: scaffold0102 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 39942 - 39901
Alignment:
Q  85 ttcagtagggagaccatgtgtttctgagagttactcctatga 126  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||    
T  39942 ttcaggagggagatcatgtatttctgagagttactcctatga 39901  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 91041 - 91073
Alignment:
Q  91 agggagaccatgtgtttctgagagttactccta 123  Q
    ||||||| |||||||||||||||||||||||||    
T  91041 agggagatcatgtgtttctgagagttactccta 91073  T

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