View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6101_high_8 (Length: 342)
Name: NF6101_high_8
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6101_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 43746155 - 43746477
Alignment:
| Q |
14 |
gaagtacaatggagaaaacgaaaacgaaaacaaagacaacacaagccagcaccgaaacactgaagggaaaaacttacaaccttgttaaccatcgtctaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43746155 |
gaagtacaatggagaaaacgaaaacgaaaacaaagacaacacaagccagcaccgaaacactgaagggaaaaacttacaaccttgttaaccatcgtctaat |
43746254 |
T |
|
| Q |
114 |
tcagaatcatgagatttatacatgaaaacctaatacatacataaaataaagattaaaaaagaaatgtggttattacttatagttacaataa--------- |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43746255 |
tcagaatcatgagatttatacatgaaaaccta----atacataaaataaagattaaaaaagaaatgtggttattacttatagttacaataaatgatgatg |
43746350 |
T |
|
| Q |
205 |
----ggttgtttcttgtagccaggggtgaaaaataaatgtaacagaaaggataaagtgaaagaagaagatttctttgagtgtgattagaaacgagaagga |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43746351 |
acagtgttgtttcttgtagcaaggggtgaaaaataaatgtaacagaaaggataaagtgaaagaagaagatttctttgagtgtgattagaaatgagaagga |
43746450 |
T |
|
| Q |
301 |
aatggcagtgacagtgagtatgggtga |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
43746451 |
aatggcagtgacagtgagtatgggtga |
43746477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 39118813 - 39118780
Alignment:
| Q |
156 |
aaaataaagattaaaaaagaaatgtggttattac |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
39118813 |
aaaataaagattaaaaaagaaatgtggttcttac |
39118780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University