View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6101_low_14 (Length: 270)
Name: NF6101_low_14
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6101_low_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 2221167 - 2221432
Alignment:
| Q |
5 |
tggagtagcataggcagcaatggccatccgaggtgaagtggtggagaagaacagacaacaataatcatcaacaagaagaacaagggacaagagcaataca |
104 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2221167 |
tggagaagaataggcagcaatggccatccgaggtgaagtggtggagaagaacagacaacaataatcatcaacaagaagaacaagggacaagagcaataca |
2221266 |
T |
|
| Q |
105 |
acggaggcatcatggaggagttttggatctgatggtatgggagcgattggttgtaatctcaaaggaactattctaaaattttgtttgcagcatagaaaaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2221267 |
acggaggcatcatggaggagttttggatctgatggtatgggagcgattggttgtaatctcgaaggaactattctacaattttgtttgcagcatagaaaaa |
2221366 |
T |
|
| Q |
205 |
ccaataagaaaattcagggtgtttaaagttgtctatatgttctgattctgttgagaaggcttttgg |
270 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2221367 |
ccaataagaaagttcagggtgtttaaagttgtctatatgttctgattctgttgagaaggcttttgg |
2221432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 38284449 - 38284576
Alignment:
| Q |
86 |
aagggacaagagcaatacaacggaggcatcatggaggagttttggatctgatggtatgggagcgattggttgtaatctcaaaggaactattctaaaattt |
185 |
Q |
| |
|
|||||| |||| ||| ||| |||||||||||||| ||| ||||||| |||||||||||||| | |||||||||||||| ||||||||| ||| || | |
|
|
| T |
38284449 |
aagggaaaagatcaacgcaatggaggcatcatggatgagctttggatttgatggtatgggagtggttggttgtaatctcgaaggaactagcctactatat |
38284548 |
T |
|
| Q |
186 |
tgtttgcagcatagaaaaaccaataaga |
213 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
38284549 |
tgtttgcagcatagaaaaaccaacaaga |
38284576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 38284605 - 38284669
Alignment:
| Q |
208 |
ataagaaaattcagggtgt--ttaaagttgtctatatgttctgattctgttgagaaggcttttgg |
270 |
Q |
| |
|
||||| |||||||||| || |||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
38284605 |
ataaggaaattcagggagtatttaaagttgttgatttgttttgattctgttgagaaggcttttgg |
38284669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University