View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6101_low_15 (Length: 263)
Name: NF6101_low_15
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6101_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 37386578 - 37386811
Alignment:
| Q |
18 |
atagagagatactcctaactaaaatccgagtaacagttgttgcaattaattcgatatatcttcccatcacttccatcattaatttaccagagcttattga |
117 |
Q |
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| T |
37386578 |
atagagagatactcctaactaaaatccgagtaacagttgttgcaattaattcgatatatcttcccatcacttccatcattaatttaccagagctcattga |
37386677 |
T |
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| Q |
118 |
ccaatataacttggttaaatgtttgaaatattaatggaatcttggtttttaggtgaatgagttgttgggaatcataattatgtttttgagagcctagcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37386678 |
ccaatataacttggttaaatgtttgaaatattaatggaatcttggtttttaggtgaatgagttgttgggaatcataattatgtttttgagagcctagcta |
37386777 |
T |
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| Q |
218 |
gcctatacggtgagagtaatgtgcttttaaagta |
251 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37386778 |
gcctatacggtgagagtaatgtgcttttaaagta |
37386811 |
T |
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