View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6101_low_8 (Length: 350)
Name: NF6101_low_8
Description: NF6101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6101_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 58 - 314
Target Start/End: Original strand, 46004663 - 46004916
Alignment:
| Q |
58 |
tatagacaaatcacaccaacaaagtaatgttcaccaatcttgttacattatgcatgctaataaaactagaaaaataacgattacctaataattaacataa |
157 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46004663 |
tataaacaaatcacaccaacaaagtaatgatcaccaatcttgttacattatgcatgctaataaaactagaaaaataaccattacctaataattaacataa |
46004762 |
T |
|
| Q |
158 |
agatgaacagaagataaccaagttcaaaagtataatattaaggaccttgtcccacaaaaacaaaaacgtcaaatatccctgagaagaaatgctaataaaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46004763 |
agatgaacagaagataaccaagttcaaaagtataatattaaggaccttgtcccacaaaaataaaaacgtcaaatatcccagagaagaaatgctaataaaa |
46004862 |
T |
|
| Q |
258 |
acattttatatatcgtatcaacaaactagtttatgaactaaacgattcgaattatac |
314 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
46004863 |
acattttatatatcgtat---caagctagtttatgaatcaaacgattcgaattatac |
46004916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University