View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6103_high_10 (Length: 341)
Name: NF6103_high_10
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 11696966 - 11696654
Alignment:
| Q |
11 |
gacatcatcatctggtgccaaaccttcttcaatcatttctgagaaaactttaagagcttccttaccacgtccatgaatcgcaagaccagatatcattaca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696966 |
gacaacatcatctggtgccaaaccttcttcaatcatttctgagaaaactttaagagcttccttaccacgtccatgaatcgcaagaccagatatcattaca |
11696867 |
T |
|
| Q |
111 |
gtgtaagaaaatctattcttctccgacatattctcgaatacgcgtaaacctttctcaagacatccacacttgacatacatatcaattaacgaagtcttca |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11696866 |
gtgtaagaatatctattcttctccgacatatttttgaatacgcgtaaacctttctcaagacatccactcttgacatacatatcaattaacgaagtcttca |
11696767 |
T |
|
| Q |
211 |
caacaacattgagttcactaatgttcctcaacaagatcccgtgtatacactttccaagatcaggagaccctaaatgagtgcaagcagagagcacattaac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11696766 |
caacaacattgagttcactaatgttcctcaacaagatcccgtgtatacactttccaagatcaggagaccctaaatgagtgcaagcagagagcacattaac |
11696667 |
T |
|
| Q |
311 |
aagtgtgctttct |
323 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11696666 |
aagtgtgctttct |
11696654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University