View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6103_high_11 (Length: 335)
Name: NF6103_high_11
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 4711881 - 4712194
Alignment:
| Q |
1 |
aagccaaaaaggcgagcaatccaaacactagttgaattgcggattacacctctaaatctagctcgtgtggggcagccaaagcaaccaccatcaacaaacc |
100 |
Q |
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| T |
4711881 |
aagccaaaaaggcgagcaatccaaacactagttgaattgcggattacacctctaaatctagctcgagtggggcagccaaagcaaccaccatcaacaaacc |
4711980 |
T |
|
| Q |
101 |
tatctttaatgaagccgttatgtgtatcgttgaaacaagagagaaaagtttcagacaaggagcaggcagccaaggacaagcgatatagaagggtagtctc |
200 |
Q |
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| T |
4711981 |
tatctttaatgaagccgttatgtgtatcgttgaaac--gagtgaaaagtttcagacaaggagcaggcagccaaggacaagcgatatagaagggtagtctc |
4712078 |
T |
|
| Q |
201 |
atttacaaagtaagtagcattacagttgctcgaagtcccccatatgcctgccacagaggttgatttgagaaccatagatacctattttgagccaagttct |
300 |
Q |
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| T |
4712079 |
atttacaaagtaagtagcattacagttgctcgaagtcccccatatgcctgccacagaggttgatttgagaaccatagatacctattttgagccaagttct |
4712178 |
T |
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| Q |
301 |
tttgtcttgagcaaag |
316 |
Q |
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| T |
4712179 |
tttgtcttgagcaaag |
4712194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 297
Target Start/End: Original strand, 4721231 - 4721435
Alignment:
| Q |
93 |
aacaaacctatctttaatgaagccgttatgtgtatcgttgaaacaagagagaaaagtttcagacaaggagcaggcagccaaggacaagcgatatagaagg |
192 |
Q |
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| T |
4721231 |
aacaaacctatcttcaatggagcggtaatcagtgttgttgaaataagtgagaaaattttcagacaagaagcgggcagccaaggacaagcgatatggaggg |
4721330 |
T |
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| Q |
193 |
gtagtctcatttacaaagtaagtagcattacagttgctcgaagtcccccatatgcctgccacagaggttgatttgagaaccatagatacctattttgagc |
292 |
Q |
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| T |
4721331 |
atagtctcattggcaaagcaagttttattacaacttttccaggtgcaccagatgtcggtcacaatggttgatttgagaaccagagataccttttttgagc |
4721430 |
T |
|
| Q |
293 |
caagt |
297 |
Q |
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||||| |
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| T |
4721431 |
caagt |
4721435 |
T |
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