View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6103_high_19 (Length: 251)
Name: NF6103_high_19
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_high_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 39609164 - 39608920
Alignment:
| Q |
7 |
gtgagatgaacagttaaattgactataaagtgatctatgtttgaataaaatcgagactataaatcatgtttggatttaaaaattccaaatcacaatttca |
106 |
Q |
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| T |
39609164 |
gtgaaatgaacagttaaattgactataaagtgatctatgtttgaataaaatcgagactataaatcatgtttgaatttaaaaattccaaatcacaatttca |
39609065 |
T |
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| Q |
107 |
agttaaagttagtgcatgtttggtttgatggaatgatggtgagccaccatgattttggctaaagttacactttaaagtttcagtttgaagtttcaacaaa |
206 |
Q |
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| T |
39609064 |
agttaaagttagtgcatgtttggtttgatggaatgatggtgagccaccatgattttggctaaagttacactttaaagtttcagtttaaagtttcaacaaa |
39608965 |
T |
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| Q |
207 |
cccacggtgtcaaactcctcatgattccaaaaatacactaaattt |
251 |
Q |
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| T |
39608964 |
cccacggtgtcaaactcctcatgattccaaaaatacactaaattt |
39608920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 39609553 - 39609469
Alignment:
| Q |
50 |
aataaaatcgagactataaatcatgtttggatttaaaaattccaaatcacaatttcaagttaaagttagtgcatgtttggtttga |
134 |
Q |
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| T |
39609553 |
aataaaattgagactataaatcatgtttggatttaaaaattccaaatcaaaatttcaagttagagttagtacatgtttggattga |
39609469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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