View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6103_high_3 (Length: 495)
Name: NF6103_high_3
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 64 - 490
Target Start/End: Complemental strand, 49872367 - 49871941
Alignment:
| Q |
64 |
taataaattgcagggatggcaggaggagccattgaaacccaaagccatgctagcaagaagaagttcgccattcttggtgtatcttcaatcttacttattg |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49872367 |
taataaattgcagggatggcaggaggagccattgaaacccaaagccatgctagcaagaagaagttcgccattcttggtgtatcttcaatcttacttattg |
49872268 |
T |
|
| Q |
164 |
ccatggtagctgcagtggccgttggtgtaaatgacggcagccaagttgaatcggaaggtgataaccaaattgcaaaatcacnnnnnnncgttcaagtgct |
263 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
49872267 |
ccatggtagctgcagtggctgttggtgtaaatgacgccggccaagttgaatcggaaggtgataaccaaattacaaaatcacaaaaaaacgttaaagtgct |
49872168 |
T |
|
| Q |
264 |
ttgtggaacaacagagtacaaacaaacatgtgaaaagagtcttgcaaaaacaggcaacaaagacatgaaggaattgatcaaacaagcattcaatgcaaca |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49872167 |
ttgtggaacaacagagtacaaacaaacatgtgaaaagagtcttgcaaaaacaggaaacaaagacatgaaggaattgatcaaacaagcattcaatgcaaca |
49872068 |
T |
|
| Q |
364 |
gctgaagaactctcgaaacaaatccacaactcaacactctacaaggaattggctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtcc |
463 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49872067 |
gctgaagaactcgtgaaacaaatacacaactcaacactctacaaggaattggctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtcc |
49871968 |
T |
|
| Q |
464 |
ttggttatgcagttgatgatgtccatc |
490 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
49871967 |
ttggttatgcagttgatgatgttcatc |
49871941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 69 - 490
Target Start/End: Complemental strand, 49866431 - 49866010
Alignment:
| Q |
69 |
aattgcagggatggcaggaggagccattgaaacccaaagccatgctagcaagaagaagttcgccattcttggtgtatcttcaatcttacttattgccatg |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49866431 |
aattgcagggatggcaggaggagccattgaaacccaaaaccatgccagtaagaagaagttcgccattcttggtgtatcttcaatcttacttattgccatg |
49866332 |
T |
|
| Q |
169 |
gtagctgcagtggccgttggtgtaaatgacggcagccaagttgaatcggaaggtgataaccaaattgcaaaatcacnnnnnnncgttcaagtgctttgtg |
268 |
Q |
| |
|
|| || || ||||| ||||||||||| || ||| ||||||||||||||||||| | ||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
49866331 |
gtggccgcggtggctgttggtgtaaaagatggcggccaagttgaatcggaaggcggtaaccaaattgtaaaatcacaaaaaatcgttcaagtactttgtg |
49866232 |
T |
|
| Q |
269 |
gaacaacagagtacaaacaaacatgtgaaaagagtcttgcaaaaacaggcaacaaagacatgaaggaattgatcaaacaagcattcaatgcaacagctga |
368 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||| || | |||||||||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
49866231 |
gaacaacagggtacaaacaaacatgcgaaaagagtcttgcaaaaacaggaaaaacagacatgaaggaattgatcaaagcagtattcaaagcaacagctga |
49866132 |
T |
|
| Q |
369 |
agaactctcgaaacaaatccacaactcaacactctacaaggaattggctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggt |
468 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49866131 |
agaactctcgaaacaaatccataactcaaaactctacaaggaattagctaccaatgacatgacaaagcaagctatggatatttgcaaagaagtccttggt |
49866032 |
T |
|
| Q |
469 |
tatgcagttgatgatgtccatc |
490 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
49866031 |
tatgcagttgatgatgttcatc |
49866010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University