View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6103_high_7 (Length: 362)
Name: NF6103_high_7
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 5294900 - 5294778
Alignment:
| Q |
19 |
cttctgccttactaatctgtttctcttcaatcatctcaatcattgaatctctaaaatcctgctttggatttgatgaacatttaatcacagcaaaactatc |
118 |
Q |
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| T |
5294900 |
cttctgccttactaatctgtttctcttcaatcatctcaatcattgaatctctaaaatcctgctttggatttgatgaacatttaatcacagcaaaactatc |
5294801 |
T |
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| Q |
119 |
taattctggtttagtactaataa |
141 |
Q |
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||||||||||||||||||||||| |
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| T |
5294800 |
taattctggtttagtactaataa |
5294778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 5294695 - 5294643
Alignment:
| Q |
212 |
gcttatttcaacctttgaaaccaatcttggtgaatatattttcaccctcgaaa |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5294695 |
gcttatttcaacctttgaaaccaatcttggtgaatatattttcaccctcgaaa |
5294643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 357
Target Start/End: Complemental strand, 5294580 - 5294550
Alignment:
| Q |
327 |
aaactatgcttctcataactttctttcttct |
357 |
Q |
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| T |
5294580 |
aaactatgcttctcataactttctttcttct |
5294550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 36170982 - 36170880
Alignment:
| Q |
19 |
cttctgccttactaatctgtttctcttcaatcatctcaatcattgaatctctaaaatcctgctttggatttgatgaacatttaatcacagcaaaactatc |
118 |
Q |
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|||||| || ||| || |||||||||| ||||||||||||||||||||||||||||| || | ||||| | ||||| || | |||||||||||||| |
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| T |
36170982 |
cttctggctgactgatatgtttctctttgatcatctcaatcattgaatctctaaaatcttgttgtggatccaaagaacacttgacaacagcaaaactatc |
36170883 |
T |
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| Q |
119 |
taa |
121 |
Q |
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||| |
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|
| T |
36170882 |
taa |
36170880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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