View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6103_high_9 (Length: 343)
Name: NF6103_high_9
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 174 - 334
Target Start/End: Complemental strand, 22122314 - 22122154
Alignment:
| Q |
174 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgag |
273 |
Q |
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| T |
22122314 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgag |
22122215 |
T |
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| Q |
274 |
aatttgttattactaatgttgtgttgatcttgtttaaaatctaattgtaagttagtataat |
334 |
Q |
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| T |
22122214 |
aatttgttattactaatgttgtgttgatcttgtttaaaatctaattgtaagttagtataat |
22122154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 174 - 334
Target Start/End: Original strand, 40512159 - 40512319
Alignment:
| Q |
174 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgag |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512159 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgag |
40512258 |
T |
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| Q |
274 |
aatttgttattactaatgttgtgttgatcttgtttaaaatctaattgtaagttagtataat |
334 |
Q |
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| T |
40512259 |
aatttgttattactaatgttgtgttgatcttgtttaaaatctaattgtaagttagtataat |
40512319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 22122448 - 22122413
Alignment:
| Q |
40 |
caggtggatttgataccgcgcatgctgcggcaaggt |
75 |
Q |
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| T |
22122448 |
caggtggatttgataccgcgcatgctgcggcaaggt |
22122413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 40512025 - 40512060
Alignment:
| Q |
40 |
caggtggatttgataccgcgcatgctgcggcaaggt |
75 |
Q |
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| T |
40512025 |
caggtggatttgataccgcgcatgctgcggcaaggt |
40512060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 39644458 - 39644554
Alignment:
| Q |
174 |
cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgt |
270 |
Q |
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| T |
39644458 |
cagagcctatgatcgagctgctataaagtttaggggacttgatgctgacattaatttcaatctagttgagtatgaggaagatatgaatcaggtttgt |
39644554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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