View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6103_low_10 (Length: 360)
Name: NF6103_low_10
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 4195827 - 4196169
Alignment:
| Q |
1 |
ctggtaaactcgtttggccttctgattctccacaaccattcatccaattcaatccaaatgatgatggagtttcctttatcattgcagagtctgatttaga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4195827 |
ctggtaaaatcgtttggccttctgattctccacaaccattcatccaattcaatccaaatgatgatggagtttcctttatcattgcagagtctgatttaga |
4195926 |
T |
|
| Q |
101 |
tttcaatcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
4195927 |
tttcaatcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaactgattcttttgcttctattatctca |
4196026 |
T |
|
| Q |
201 |
attcagataaccttttttccggaaagtggtttttccattggaataagcactcaccatgctattctagatggaaaatcctcaatcatgttcatcaaagctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4196027 |
attcagataaccttttttccggaaagtggtttttccattggaataagcactcaccatgctattctagatggaaaatcctcaatcatgttcatcaaagctt |
4196126 |
T |
|
| Q |
301 |
gggcttatctatgcaataaaaccattgaaaccgaagaaccacc |
343 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4196127 |
gggcttatctatgcaacaaaaccattgaaaccgaagaaccacc |
4196169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 61 - 339
Target Start/End: Original strand, 4233633 - 4233911
Alignment:
| Q |
61 |
atgatggagtttcctttatcattgcagagtctgatttagatttcaatcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttatacc |
160 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||| |||||||| || |||||||||||||| | |||| |||| |
|
|
| T |
4233633 |
atgatggagtttccttgatcattgcagagtccgatgtagatttcaatcatgtcattgaaaattcaccccacgatgcttctttgtctcgttgttttgtacc |
4233732 |
T |
|
| Q |
161 |
acatttggaatcaacagattcttttgcttctattatttcaattcagataaccttttttccggaaagtggtttttccattggaataagcactcaccatgct |
260 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4233733 |
acatttagaatcgacaaattcttttgcttctattatctcagttcagataaccctttttccagaaagtggtttttccattggaataagcactcatcatgct |
4233832 |
T |
|
| Q |
261 |
attctagatggaaaatcctcaatcatgttcatcaaagcttgggcttatctatgcaataaaaccattgaaaccgaagaac |
339 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
4233833 |
gctcttgatggaaaatcctcaaccatgttcatcaaagcttgggcatatctatgcaacaaaactattgaaacagaagaac |
4233911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 61 - 338
Target Start/End: Original strand, 4188995 - 4189272
Alignment:
| Q |
61 |
atgatggagtttcctttatcattgcagagtctgatttagatttcaatcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttatacc |
160 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
4188995 |
atgatggtgtttcattgctcattgcagagtctgatgcagatttcagtcatgtgattgaaaactcacctcatgaagcttctttgtctcgttcttttctacc |
4189094 |
T |
|
| Q |
161 |
acatttggaatcaacagattcttttgcttctattatttcaattcagataaccttttttccggaaagtggtttttccattggaataagcactcaccatgct |
260 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4189095 |
acatttggaatcaacagattcatctgcttctattatttcaattcagataaccctttttccaaaaagtggtttttccattggaataagcacacaccatgct |
4189194 |
T |
|
| Q |
261 |
attctagatggaaaatcctcaatcatgttcatcaaagcttgggcttatctatgcaataaaaccattgaaaccgaagaa |
338 |
Q |
| |
|
||| ||||||||||| |||| ||||||||| ||||||||||||||||||||| | |||| ||||||||| ||||| |
|
|
| T |
4189195 |
ggtcttgatggaaaatcatcaaccatgttcatgaaagcttgggcttatctatgccacaaaataattgaaaccaaagaa |
4189272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 4250604 - 4250933
Alignment:
| Q |
1 |
ctggtaaactcgtttggccttctgattctccacaaccattcatccaattcaatccaaatgatgatggagtttcctttatcattgcagagtctgatttaga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||| |||| ||||| |||| || |||||||||||||| || ||||||||||| ||||||| ||| |
|
|
| T |
4250604 |
ctggtaacatcgtttggccttctgattcttcaaaacccatcattcaatttgatcccaacgatgatggagtttcgttgatcattgcagaatctgattcaga |
4250703 |
T |
|
| Q |
101 |
tttcaatcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttca |
200 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| || || |||||| |||||||||||||||||||||| ||| |
|
|
| T |
4250704 |
tttcaatcatgtcgttgaaaactcaccccatgaagcttctttgtctcgttcttttataccccacttagaatcatcagattcttttgcttctattatgtca |
4250803 |
T |
|
| Q |
201 |
attcagataaccttttttccggaaagtggtttttccattggaataagcactcaccatgctattctagatggaaaatcctcaatcatgttcatcaaagctt |
300 |
Q |
| |
|
| || || ||| |||| || | ||||||||| ||| ||||| |||||||| |||||| |||| ||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
4250804 |
ctccaaatcacccttttcccaaatagtggttttagcatcggaatcagcactcatcatgctgttcttgatggaaaatcttcaaccatgttcgtcaaagctt |
4250903 |
T |
|
| Q |
301 |
gggcttatctatgcaataaaaccattgaaa |
330 |
Q |
| |
|
|||||||||||||||| ||| | ||||||| |
|
|
| T |
4250904 |
gggcttatctatgcaaaaaagctattgaaa |
4250933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 115 - 332
Target Start/End: Original strand, 4192189 - 4192406
Alignment:
| Q |
115 |
ttgaaaaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttcaattcagataacctt |
214 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
4192189 |
ttgaaaactcacccgatgaagcttctttgtctcgttcttttataccgcatttggaatccgcagattcttttgcttctattatttcagttcagataaccct |
4192288 |
T |
|
| Q |
215 |
ttttccggaaagtggtttttccattggaataagcactcaccatgctattctagatggaaaatcctcaatcatgttcatcaaagcttgggcttatctatgc |
314 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||| ||||||| | |||| ||||||||||| |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
4192289 |
ttttcaaaaaagtggtttttccattagaactagcacacaccatggtgttcttgatggaaaatcttcaaccatgttcatcaaagcttgggcttatttatgc |
4192388 |
T |
|
| Q |
315 |
aataaaaccattgaaacc |
332 |
Q |
| |
|
|| ||||| ||||||||| |
|
|
| T |
4192389 |
aacaaaacaattgaaacc |
4192406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 61 - 277
Target Start/End: Original strand, 4241421 - 4241637
Alignment:
| Q |
61 |
atgatggagtttcctttatcattgcagagtctgatttagatttcaatcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttatacc |
160 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||| ||||||||| ||||||||||| |
|
|
| T |
4241421 |
atgatggtgtttccttgctcattgcagagtctgatttagatttcaatcatgtcattgaaaactcaccaaaagaagcttatttgtctcgttcttttatacc |
4241520 |
T |
|
| Q |
161 |
acatttggaatcaacagattcttttgcttctattatttcaattcagataaccttttttccggaaagtggtttttccattggaataagcactcaccatgct |
260 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| ||| | || ||||| ||||||| || |||||||||||||||||||||||||||| |||||| |
|
|
| T |
4241521 |
acatttgaaatcaacaaattcttttgcttctattatctcactccaaataactctttttccaaaacgtggtttttccattggaataagcactcatcatgct |
4241620 |
T |
|
| Q |
261 |
attctagatggaaaatc |
277 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
4241621 |
gttcttgatggaaaatc |
4241637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 123 - 298
Target Start/End: Original strand, 4095113 - 4095288
Alignment:
| Q |
123 |
tcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttcaattcagataaccttttttccgg |
222 |
Q |
| |
|
||||| || ||||||||||||||||| |||||| |||| || || |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4095113 |
tcaccacaagaagcttctttgtctcgttcttttgtacctcacttagaatcatcagattcttttgcttctattatttcaattcagataaccctttttccga |
4095212 |
T |
|
| Q |
223 |
aaagtggtttttccattggaataagcactcaccatgctattctagatggaaaatcctcaatcatgttcatcaaagc |
298 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
4095213 |
aaaatggtttttccattggaataagcacacaccatgctgttcttgatggaaaatcttcaaccatgttcatcaaagc |
4095288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4094979 - 4095054
Alignment:
| Q |
1 |
ctggtaaactcgtttggccttctgattctccacaaccattcatccaattcaatccaaatgatgatggagtttcctt |
76 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
4094979 |
ctggtaacatcgtttggccttcggattctcctaaaccattcctccaattcaatccaaatgatgacggagtttcctt |
4095054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 4246440 - 4246511
Alignment:
| Q |
272 |
aaaatcctcaatcatgttcatcaaagcttgggcttatctatgcaataaaaccattgaaaccgaagaaccacc |
343 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
4246440 |
aaaatcttcaatcatcttcatcaaagcttgggcttatctatgcaacaaaacatttgaaaccgaagaatcacc |
4246511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 4102642 - 4102722
Alignment:
| Q |
120 |
aaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttca |
200 |
Q |
| |
|
|||||||| || ||||||||||||||||| || ||| |||| || || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
4102642 |
aaatcaccacaagaagcttctttgtctcgttcgtttgtacctcacttagaatcaacagattcttttgcttccattatttca |
4102722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4122004 - 4122079
Alignment:
| Q |
1 |
ctggtaaactcgtttggccttctgattctccacaaccattcatccaattcaatccaaatgatgatggagtttcctt |
76 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||| ||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
4122004 |
ctggtaacatcgtttggccttctaattctccaaaaccaatcatccagttcaatccaaatgaagacggagtttcctt |
4122079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University