View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6103_low_11 (Length: 352)
Name: NF6103_low_11
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 39608470 - 39608630
Alignment:
| Q |
18 |
atcataactttctttgtctcttttcctgttaaatgaatgtagctctaactaacaaaactggtaatttgcatttctttgatgttcatgcatgcatggctaa |
117 |
Q |
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| T |
39608470 |
atcataactttctttgtctcttttcctgttaaatgaatgtagctctatctaacaaaactggtaatttgcatttctttgatgttcatgcatgcatggctaa |
39608569 |
T |
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| Q |
118 |
attagaatactgtaagtgtagattaataatcttgaaatatttagca-tttttcttggaaca |
177 |
Q |
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| T |
39608570 |
attagaatactgtaagtgtggattaataatcttgaaatatctagcattttttcttggaaca |
39608630 |
T |
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Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 39608691 - 39608790
Alignment:
| Q |
240 |
aggtataagattaaaaaatgcatgatgataaatttgtgtcatatcaatcaattttctaatgtggatcgactatctattgatcaagcagattacttggcct |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39608691 |
aggtataagattaaaaaatgcatgatgataaatttgtgtcatatcaatcaattttctaatgtggatcgactatctattgatcaagcagattacttggcct |
39608790 |
T |
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