View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6103_low_16 (Length: 307)

Name: NF6103_low_16
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6103_low_16
NF6103_low_16
[»] chr7 (3 HSPs)
chr7 (89-262)||(42349900-42350065)
chr7 (263-293)||(12139245-12139275)
chr7 (265-293)||(47226201-47226229)
[»] chr1 (4 HSPs)
chr1 (257-293)||(12381038-12381074)
chr1 (257-293)||(12385105-12385141)
chr1 (263-297)||(35977883-35977917)
chr1 (263-293)||(45977939-45977969)
[»] scaffold0250 (1 HSPs)
scaffold0250 (263-297)||(7064-7098)
[»] scaffold0009 (1 HSPs)
scaffold0009 (263-296)||(6552-6585)
[»] chr4 (5 HSPs)
chr4 (260-293)||(33247256-33247289)
chr4 (263-293)||(12153088-12153118)
chr4 (263-293)||(18207168-18207198)
chr4 (263-293)||(52018700-52018730)
chr4 (256-293)||(17080768-17080805)
[»] chr5 (1 HSPs)
chr5 (262-293)||(13032035-13032066)
[»] scaffold0012 (1 HSPs)
scaffold0012 (263-293)||(207980-208010)
[»] chr8 (6 HSPs)
chr8 (263-297)||(10652742-10652776)
chr8 (256-293)||(12177692-12177729)
chr8 (256-293)||(12422120-12422157)
chr8 (257-297)||(10672636-10672676)
chr8 (263-291)||(30426799-30426827)
chr8 (263-291)||(41511179-41511207)
[»] chr6 (2 HSPs)
chr6 (263-293)||(29698080-29698110)
chr6 (261-294)||(13089868-13089901)


Alignment Details
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 262
Target Start/End: Complemental strand, 42350065 - 42349900
Alignment:
Q  89 ctttgaaggttttatatgtattacnnnnnnnn-cttcaaatagtttagtagctataaattcacatcttaaaatgaataaatgagatactcagagttcaaa 187  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||           
T  42350065 ctttgaaggttttatatgtattactttttttttcttcaaatagtttagtagctataaatttacatcttaaaatgaataaataaaatgctcaga------- 42349973  T
Q  188 ttccgactcctacatatattat--aatgtcgctacaaaccgagttaagctctcagagaaattgcataaccttttatc 262  Q
        ||||| | ||||||||||  |||||| ||||||||| ||||||||||||| |||| |||||||||||||||||    
T  42349972 ----gactcatgcatatattatgcaatgtctctacaaaccaagttaagctctcaaagaagttgcataaccttttatc 42349900  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 12139245 - 12139275
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||||    
T  12139245 gggttaggatcctctccatttatgtgtttct 12139275  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 47226229 - 47226201
Alignment:
Q  265 gttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||    
T  47226229 gttaggatcctctccatttatgtgtttct 47226201  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 12381074 - 12381038
Alignment:
Q  257 tttatcgggttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||||||||||    
T  12381074 tttatcgggttaggatcctctccatttatgtgtttct 12381038  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 12385141 - 12385105
Alignment:
Q  257 tttatcgggttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||||||||||    
T  12385141 tttatcgggttaggatcctctccatttatgtgtttct 12385105  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 35977883 - 35977917
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttcttcat 297  Q
    ||||||||||||||||||||||||||||| |||||    
T  35977883 gggttaggatcctctccatttatgtgtttattcat 35977917  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 45977939 - 45977969
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||||    
T  45977939 gggttaggatcctctccatttatgtgtttct 45977969  T

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Target: scaffold0250 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 7064 - 7098
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttcttcat 297  Q
    |||||||||||||||||||||||||||||||||||    
T  7064 gggttaggatcctctccatttatgtgtttcttcat 7098  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 6585 - 6552
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttcttca 296  Q
    ||||||||||||||||||||||||||||||||||    
T  6585 gggttaggatcctctccatttatgtgtttcttca 6552  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 33247289 - 33247256
Alignment:
Q  260 atcgggttaggatcctctccatttatgtgtttct 293  Q
    ||||||||||||||||||||||||||||||||||    
T  33247289 atcgggttaggatcctctccatttatgtgtttct 33247256  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 12153088 - 12153118
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||||    
T  12153088 gggttaggatcctctccatttatgtgtttct 12153118  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Complemental strand, 18207198 - 18207168
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||||    
T  18207198 gggttaggatcctctccatttatgtgtttct 18207168  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 52018700 - 52018730
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||||    
T  52018700 gggttaggatcctctccatttatgtgtttct 52018730  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 17080805 - 17080768
Alignment:
Q  256 ttttatcgggttaggatcctctccatttatgtgtttct 293  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  17080805 ttttatggggttaggatcccctccatttatgtgtttct 17080768  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 293
Target Start/End: Original strand, 13032035 - 13032066
Alignment:
Q  262 cgggttaggatcctctccatttatgtgtttct 293  Q
    ||||||||||||||||||||||||||||||||    
T  13032035 cgggttaggatcctctccatttatgtgtttct 13032066  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 207980 - 208010
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||||    
T  207980 gggttaggatcctctccatttatgtgtttct 208010  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 297
Target Start/End: Complemental strand, 10652776 - 10652742
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttcttcat 297  Q
    |||||| ||||||||||||||||||||||||||||    
T  10652776 gggttaagatcctctccatttatgtgtttcttcat 10652742  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 12177729 - 12177692
Alignment:
Q  256 ttttatcgggttaggatcctctccatttatgtgtttct 293  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  12177729 ttttatagggttaggatcctctctatttatgtgtttct 12177692  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 12422157 - 12422120
Alignment:
Q  256 ttttatcgggttaggatcctctccatttatgtgtttct 293  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  12422157 ttttatagggttaggatcctctctatttatgtgtttct 12422120  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 10672676 - 10672636
Alignment:
Q  257 tttatcgggttaggatcctctccatttatgtgtttcttcat 297  Q
    ||||| ||||||| ||||||| |||||||||||||||||||    
T  10672676 tttattgggttagtatcctcttcatttatgtgtttcttcat 10672636  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 30426827 - 30426799
Alignment:
Q  263 gggttaggatcctctccatttatgtgttt 291  Q
    |||||||||||||||||||||||||||||    
T  30426827 gggttaggatcctctccatttatgtgttt 30426799  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 41511179 - 41511207
Alignment:
Q  263 gggttaggatcctctccatttatgtgttt 291  Q
    |||||||||||||||||||||||||||||    
T  41511179 gggttaggatcctctccatttatgtgttt 41511207  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 29698080 - 29698110
Alignment:
Q  263 gggttaggatcctctccatttatgtgtttct 293  Q
    |||||||||||||||||||||||||||||||    
T  29698080 gggttaggatcctctccatttatgtgtttct 29698110  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 13089901 - 13089868
Alignment:
Q  261 tcgggttaggatcctctccatttatgtgtttctt 294  Q
    ||||||||||||||||| ||||||||||||||||    
T  13089901 tcgggttaggatcctcttcatttatgtgtttctt 13089868  T

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