View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6103_low_17 (Length: 306)
Name: NF6103_low_17
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 20709590 - 20709695
Alignment:
| Q |
184 |
ttaaaactacgaacctttaattcattttatcattcactaattaatttagcaaaaaacacacaaactaattaatgcaacaactttactcttaaaatctaac |
283 |
Q |
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| T |
20709590 |
ttaaaactatgaacctttaattcattttatcattcactaatcaatttagcaaaa-acacacaaactaattaatgcaacaactttactctaaaaatctaac |
20709688 |
T |
|
| Q |
284 |
atgcata |
290 |
Q |
| |
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||||||| |
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| T |
20709689 |
atgcata |
20709695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 20709105 - 20709205
Alignment:
| Q |
91 |
gaaactattttattcaggaaattctagttaatccttaaagtttcattttcatatgcatcaagaatcacttcaccacaaatcccaattaagtagttaaaac |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
20709105 |
gaaactattttattcaggaaattctagttaatccttaaaatttcattttcatatgcatcaagaatcacttcacc-caaagcccaattaagtagttaaaac |
20709203 |
T |
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| Q |
191 |
ta |
192 |
Q |
| |
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|| |
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| T |
20709204 |
ta |
20709205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 20709025 - 20709064
Alignment:
| Q |
11 |
tagccaatttttaaattgacgttatgcaattggacccgtc |
50 |
Q |
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| T |
20709025 |
tagccaatttttaaattgaagttatgcaattggacccgtc |
20709064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 12082895 - 12082822
Alignment:
| Q |
96 |
tattttattcaggaaattctagttaatccttaaagtttcattttcatatgcatcaagaatcacttcaccacaaa |
169 |
Q |
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| T |
12082895 |
tattttatgcagaaaattatagttaatccttaaagtttaattttcatatgcaacaagaatcacttcaccacaaa |
12082822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 12082734 - 12082691
Alignment:
| Q |
245 |
aaactaattaatgcaacaacttta-ctcttaaaatctaacatgc |
287 |
Q |
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| T |
12082734 |
aaactaattaatgcagcaactttaactcttaaaatctaacatgc |
12082691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 4196167 - 4196246
Alignment:
| Q |
90 |
tgaaactattttattcaggaaattctagttaatccttaaagtttcattttcatatgcatcaagaatcacttcaccacaaa |
169 |
Q |
| |
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|||| ||| ||||| ||||||||| ||||||||| | ||||||| | |||||||||| ||||||||||||||||||||| |
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| T |
4196167 |
tgaacctactttatgcaggaaattttagttaatctattaagtttcttcttcatatgcaacaagaatcacttcaccacaaa |
4196246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 290
Target Start/End: Original strand, 4196270 - 4196381
Alignment:
| Q |
181 |
tagttaaaactacgaacctttaattcattttatcattcac---taattaatttagcaaaaaacacacaaactaattaatgcaacaacttt-actcttaaa |
276 |
Q |
| |
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|||||||||||| || |||||||||||| |||||||||| |||| |||||||| || | |||||| |||| |||||||||| ||| | ||||||| |
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| T |
4196270 |
tagttaaaactatcaaactttaattcattctatcattcacacataatcaatttagc--aagaggcacaaattaatgaatgcaacaattttaattcttaaa |
4196367 |
T |
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| Q |
277 |
atctaacatgcata |
290 |
Q |
| |
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||||||||||||| |
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|
| T |
4196368 |
gtctaacatgcata |
4196381 |
T |
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