View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6103_low_2 (Length: 728)

Name: NF6103_low_2
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6103_low_2
NF6103_low_2
[»] chr3 (5 HSPs)
chr3 (15-219)||(19881506-19881714)
chr3 (15-219)||(53972682-53972889)
chr3 (24-206)||(37982941-37983124)
chr3 (246-360)||(52127681-52127803)
chr3 (410-492)||(10356372-10356454)
[»] scaffold0596 (1 HSPs)
scaffold0596 (15-219)||(1172-1378)
[»] chr2 (5 HSPs)
chr2 (15-219)||(12742206-12742414)
chr2 (23-219)||(23348384-23348583)
chr2 (15-206)||(10328422-10328613)
chr2 (15-206)||(18354703-18354895)
chr2 (247-359)||(17467958-17468079)
[»] chr5 (4 HSPs)
chr5 (15-219)||(9044320-9044529)
chr5 (15-206)||(7472880-7473073)
chr5 (15-219)||(30441941-30442149)
chr5 (237-314)||(40163732-40163811)
[»] chr7 (2 HSPs)
chr7 (15-219)||(43070778-43070985)
chr7 (246-360)||(24760246-24760368)
[»] chr8 (1 HSPs)
chr8 (15-101)||(33688134-33688222)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 2e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 19881506 - 19881714
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctat 114  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||    
T  19881506 catcaatggacatattggtgtgtttgaaaaaaaaaaaaacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 19881605  T
Q  115 ttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttagg--atatatagtag 210  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||  |||||||||||    
T  19881606 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtag 19881705  T
Q  211 catcttcaa 219  Q
    |||||||||    
T  19881706 catcttcaa 19881714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 53972682 - 53972889
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctat 114  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||    
T  53972682 catcaatggacatattggtgtgtttgaaaa-aaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 53972780  T
Q  115 ttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttagg--atatatagtag 210  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||  |||||||||||    
T  53972781 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtag 53972880  T
Q  211 catcttcaa 219  Q
    |||||||||    
T  53972881 catcttcaa 53972889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 37983124 - 37982941
Alignment:
Q  24 acatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctatttaaatatc 123  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  37983124 acatattggtgtgtttgaaaa-aaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatc 37983026  T
Q  124 atcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttaggatatata 206  Q
    ||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  37983025 atcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatata 37982941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 246 - 360
Target Start/End: Complemental strand, 52127803 - 52127681
Alignment:
Q  246 ttaaatcacataattaaaaagggctttaaaa-caattccttacatgtaaatcctttgggaactcaatga-------atttgcaatccacatagacgattg 337  Q
    ||||||||| |||||||||||||  |||||| ||||| ||||||||||||||||||| ||||| |||||       ||| | || |||||||||||||||    
T  52127803 ttaaatcacgtaattaaaaagggggttaaaaacaatttcttacatgtaaatcctttgagaacttaatgaacactatattcgtaacccacatagacgattg 52127704  T
Q  338 gtcttctacaacgaacaatcacc 360  Q
    | ||||| || ||||||||||||    
T  52127703 ggcttctgcatcgaacaatcacc 52127681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 492
Target Start/End: Original strand, 10356372 - 10356454
Alignment:
Q  410 tcaaatatcactcgttattgacgcccgtttcattatgttgctgctggcacatcaaagtttccaaccctaagcttcaaaagatg 492  Q
    |||| |||||||| ||| || | |||||||||||||||||  | || | ||| ||||||||||||||||||||||||||||||    
T  10356372 tcaactatcactccttactggctcccgtttcattatgttgtcgttgccgcataaaagtttccaaccctaagcttcaaaagatg 10356454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 1378 - 1172
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctat 114  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||||||||  ||||||||||||||||||||| | ||||||||||||||||||||||    
T  1378 catcaatggacatattggtgtgtttgaaaa--aaaaatacacatgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctat 1281  T
Q  115 ttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttagg--atatatagtag 210  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||  |||||||||||    
T  1280 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtag 1181  T
Q  211 catcttcaa 219  Q
    |||||||||    
T  1180 catcttcaa 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 12742414 - 12742206
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctat 114  Q
    ||||||| |||||||||||||||||||||| |||| | ||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||    
T  12742414 catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 12742315  T
Q  115 ttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttagg--atatatagtag 210  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||  |||||||||||    
T  12742314 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtag 12742215  T
Q  211 catcttcaa 219  Q
    |||||||||    
T  12742214 catcttcaa 12742206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 23348384 - 23348583
Alignment:
Q  23 gacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctatttaaatat 122  Q
    ||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  23348384 gacatattggtgtgtttaaaaa-aaaaaacacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatat 23348482  T
Q  123 catcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttagg--atatatagtagcatcttca 218  Q
    |||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  23348483 catcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttca 23348582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 10328422 - 10328613
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctat 114  Q
    ||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||    
T  10328422 catcaatggacatattggtgtgtttgaaaa--aaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 10328519  T
Q  115 ttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttaggatatata 206  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||||||| || | ||||||||||||||||||||||    
T  10328520 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagatacatgaacaacgatttaggatatata 10328613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 18354703 - 18354895
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctat 114  Q
    ||||||| |||||||||||||||||||||| |||| | ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||    
T  18354703 catcaatggacatattggtgtgtttgaaaa-aaaatacacatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctat 18354801  T
Q  115 ttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttaggatatata 206  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||||||| || ||||||||||||||||||||||||    
T  18354802 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagctacaggaacaacgatttaggatatata 18354895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 359
Target Start/End: Complemental strand, 17468079 - 17467958
Alignment:
Q  247 taaatcacataattaa--aaagggctttaaaacaattccttacatgtaaatcctttgggaactcaatga-------atttgcaatccacatagacgattg 337  Q
    ||||||||||||||||  |||||| || ||||||| ||||||||||||||||||||| |||  ||||||       ||| |||  ||||||| |||||||    
T  17468079 taaatcacataattaagaaaaggggttaaaaacaactccttacatgtaaatcctttgagaaaacaatgaacgcagcattcgcagcccacataaacgattg 17467980  T
Q  338 gtcttctacaacgaacaatcac 359  Q
    || ||||||| |||||||||||    
T  17467979 gtattctacatcgaacaatcac 17467958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 4e-74; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 9044529 - 9044320
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacat--gattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatct 112  Q
    ||||||| |||||||||||||||||||||| |||||||||||||  |||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  9044529 catcaatggacatattggtgtgtttgaaaa-aaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatct 9044431  T
Q  113 atttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttagg--atatatagt 208  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||  |||||||||    
T  9044430 atttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagt 9044331  T
Q  209 agcatcttcaa 219  Q
    |||||||||||    
T  9044330 agcatcttcaa 9044320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 7472880 - 7473073
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctat 114  Q
    ||||||| |||||||||||||||||||||| |||| | ||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||    
T  7472880 catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 7472979  T
Q  115 ttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttaggatatata 206  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  7472980 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatata 7473073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 30441941 - 30442149
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctat 114  Q
    ||||||| |||||||||||||||||||||| |||| | ||| |||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||    
T  30441941 catcaatggacatattggtgtgtttgaaaaaaaaataaacatatgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctat 30442040  T
Q  115 ttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttagg--atatatagtag 210  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||  |||||||||||    
T  30442041 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtag 30442140  T
Q  211 catcttcaa 219  Q
    |||||||||    
T  30442141 catcttcaa 30442149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 40163811 - 40163732
Alignment:
Q  237 acaaagtttttaaatcacataattaaaaagg--gctttaaaacaattccttacatgtaaatcctttgggaactcaatgaa 314  Q
    |||| ||| ||||||||||||||||||| ||  | |  || |||||| ||||||||||||||||||| ||||||||||||    
T  40163811 acaatgttcttaaatcacataattaaaaggggaggtcaaacacaatttcttacatgtaaatcctttgagaactcaatgaa 40163732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 6e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 43070778 - 43070985
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgattttaaggtatcaatcaatttattaacagtacaatacatgatggtaaaatctat 114  Q
    ||||||| |||||||||||||||||||||| |||| | ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||    
T  43070778 catcaatggacatattggtgtgtttgaaaa-aaaatacacatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctat 43070876  T
Q  115 ttaaatatcatcaattcactaacaaacaaaccaaaattgtaatggaata--aaagttagggaaaagttaaaggaacaacgatttagg--atatatagtag 210  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||||||  |||||||||||    
T  43070877 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtag 43070976  T
Q  211 catcttcaa 219  Q
    |||||||||    
T  43070977 catcttcaa 43070985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 246 - 360
Target Start/End: Complemental strand, 24760368 - 24760246
Alignment:
Q  246 ttaaatcacataattaaaaagggctttaaaa-caattccttacatgtaaatcctttgggaactcaatga-------atttgcaatccacatagacgattg 337  Q
    ||||||||| |||||||||||||  |||||| ||||| ||||||||||||||||||| ||||| |||||       ||| | || |||||||||||||||    
T  24760368 ttaaatcacgtaattaaaaagggggttaaaaacaatttcttacatgtaaatcctttgagaacttaatgaacactatattcgtaacccacatagacgattg 24760269  T
Q  338 gtcttctacaacgaacaatcacc 360  Q
    | ||||| || ||||||||||||    
T  24760268 ggcttctgcatcgaacaatcacc 24760246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 33688134 - 33688222
Alignment:
Q  15 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatg--attttaaggtatcaatcaatttattaacagtacaatacatga 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||| || || ||||||    
T  33688134 catcaatcgacatattggtgtgtttgaaaagaaaaaatacacatgatattttaaagtatcaatcaatttattaacattataaaacatga 33688222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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