View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6103_low_20 (Length: 260)
Name: NF6103_low_20
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 26301681 - 26301432
Alignment:
| Q |
1 |
tgatttgattctaactccattactcgtgccattaaatgtgcaattgttaacaattatgtcggcaagatcttctccgtcttcatacttaccaagacttccg |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26301681 |
tgatttgattctaactccattactcgtaccattaaatgtgcaattcttaacaattatgtcggcaagatcttcttcgtcttcatacttaccaagacttccg |
26301582 |
T |
|
| Q |
101 |
atgcttattccataaccaggaccacagtacacatccataattcgaacattttttaaacccgagagcatagaaatgcagtcatcgcccgttctaatgttaa |
200 |
Q |
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||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26301581 |
atgtttattccatgaccaggaccacaatacacatccataatttgaacattttttaaacccgagagcatagaaatgcagtcattgcccgttctaatgttaa |
26301482 |
T |
|
| Q |
201 |
cacttgtgatatttatacccgttgactttcctattttgatgccatctgtg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26301481 |
cacttgtgatatttatacccgttgactttcctattttgatgccatctgtg |
26301432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 11532561 - 11532313
Alignment:
| Q |
2 |
gatttgattctaactccattactcgtgccattaaatgtgcaattgttaacaattatgtcggcaagatcttctccgtcttcatacttaccaagacttccga |
101 |
Q |
| |
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|||||||||||||| || ||||| ||||||||||| || ||||| ||||||| ||||| ||| ||||||| | |||||| | |||||||||||||| |
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| T |
11532561 |
gatttgattctaacaccgttacttgtgccattaaaggtacaattcttaacaacaatgtcatcaatatcttcttcaccttcattcccaccaagacttccga |
11532462 |
T |
|
| Q |
102 |
tgcttattccataaccaggaccacagtacacatccataattcgaacattttttaaacccgagagcatagaaatgcagtcatcgcccgttctaatgttaac |
201 |
Q |
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|| ||||||| |||||||||||| | ||||| |||||||||||| | ||| |||||||||| |||||| |||||||| |||| |||||| || |
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| T |
11532461 |
cactaattccatgaccaggaccacaaaaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcac |
11532362 |
T |
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| Q |
202 |
acttgtgatatttatacccgttgactttcctattttgatgccatctgtg |
250 |
Q |
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||||| |||||||| ||| ||||| | |||||||| || ||||||||| |
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| T |
11532361 |
acttgaaatatttattccctttgacatccctattttaataccatctgtg |
11532313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26883798 - 26883698
Alignment:
| Q |
1 |
tgatttgattctaactccattactcgtgccattaaatgtgcaattgttaacaattatgtcggcaagatcttctccgtcttcatacttaccaagacttccg |
100 |
Q |
| |
|
||||||||||||||| || |||| || ||| |||| || ||||| ||||||||||||| ||||||||| | | |||||||||||||||||||||| |
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| T |
26883798 |
tgatttgattctaacatcaatacttgtaccactaaaggtacaatttgtaacaattatgtcatcaagatcttgttcactttcatacttaccaagacttccg |
26883699 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
26883698 |
a |
26883698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26884498 - 26884398
Alignment:
| Q |
1 |
tgatttgattctaactccattactcgtgccattaaatgtgcaattgttaacaattatgtcggcaagatcttctccgtcttcatacttaccaagacttccg |
100 |
Q |
| |
|
||||||||||||||| || |||| || ||| |||| || ||||| ||||||||||||| ||||||||| | | |||||||||||||||||||||| |
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| T |
26884498 |
tgatttgattctaacatcaatacttgtaccactaaaggtacaatttgtaacaattatgtcatcaagatcttgttcactttcatacttaccaagacttccg |
26884399 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
26884398 |
a |
26884398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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