View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6103_low_21 (Length: 253)
Name: NF6103_low_21
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_low_21 |
 | |
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| [»] chr4 (5 HSPs) |
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| [»] scaffold0536 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 48965694 - 48965460
Alignment:
| Q |
19 |
caattcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagca |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48965694 |
caattccaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagca |
48965595 |
T |
|
| Q |
119 |
tcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
48965594 |
tcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagggattcgaagaga |
48965495 |
T |
|
| Q |
219 |
gaaacattggaaagaagggtttgattattaggggt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
48965494 |
gaaacattggaaagaagggtttgattattaggggt |
48965460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 252
Target Start/End: Complemental strand, 48958506 - 48958276
Alignment:
| Q |
25 |
gaagcgacataactcagtgttgtacataagctttggaagcctctgtcgtt-atcaggataaacagctttatgagattgcgtgtgcaatagaagcatcggg |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| | ||| || ||| | ||||||| ||||||||||||||||||| ||||||||||| || |
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|
| T |
48958506 |
gaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctg-ataaacaactttatgagattgcgtgtgggatagaagcatcagg |
48958408 |
T |
|
| Q |
124 |
tcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaac |
223 |
Q |
| |
|
||| || ||| |||||||| |||| || || |||||||| || ||||||||||||||||| ||||||||| || || ||||||||||||||||| |
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|
| T |
48958407 |
tcacgaatttgtatgggttgttcctgagaagaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaaac |
48958308 |
T |
|
| Q |
224 |
attggaaagaag---ggtttgattattagggg |
252 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |
|
|
| T |
48958307 |
attggaaagaagaaaggtttgatcattagggg |
48958276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 48961569 - 48961445
Alignment:
| Q |
111 |
tagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagatt |
210 |
Q |
| |
|
|||||||||||||||| || ||| |||||||| |||| || || ||||||| ||||||||| ||||||||||| | |||||||| || || |||| |
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|
| T |
48961569 |
tagaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatt |
48961470 |
T |
|
| Q |
211 |
cgaagagagaaacattggaaagaag |
235 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
48961469 |
tgaagagagaaacattgaaaagaag |
48961445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 48912170 - 48912284
Alignment:
| Q |
33 |
ataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattt |
132 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||| |||| || | ||||||||| ||||||||||||||||| | || ||||||||| |||| || || |
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|
| T |
48912170 |
ataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaatt |
48912269 |
T |
|
| Q |
133 |
tatatgggttattcc |
147 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
48912270 |
catatgggttgttcc |
48912284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 228
Target Start/End: Complemental strand, 48974401 - 48974265
Alignment:
| Q |
92 |
tatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaa |
191 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| | || ||||||||| | ||| || || ||||||||||||||||| | || ||||| ||| |
|
|
| T |
48974401 |
tatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgtccccgagaagaaagggaaagaggatgagagcaatgacgagaacgaaa |
48974302 |
T |
|
| Q |
192 |
agtggttaccaaagagattcgaagagagaaacattgg |
228 |
Q |
| |
|
||||| | |||||| |||| |||||||| || ||||| |
|
|
| T |
48974301 |
agtggatgccaaagggatttgaagagaggaatattgg |
48974265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 6326 - 6559
Alignment:
| Q |
23 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgg |
122 |
Q |
| |
|
||||||| | |||||||||||||||||||| ||||||||||| | || | || | ||||||||| ||||| |||||||| |||| ||||||||||||| |
|
|
| T |
6326 |
tcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgg |
6425 |
T |
|
| Q |
123 |
gtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaa |
222 |
Q |
| |
|
|||| | || ||||||||| |||| || || |||||||| |||||||||||||||||||| ||| ||||| |||||| |||||||||||||||| |
|
|
| T |
6426 |
gtcacaaattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaagaggagaaaggaaaatggttgccaaagggattcgaagagagaaa |
6525 |
T |
|
| Q |
223 |
cattgga---aagaagggtttgattattaggggt |
253 |
Q |
| |
|
|| ||| |||||||||||||||||||||||| |
|
|
| T |
6526 |
tatcggaaagaagaagggtttgattattaggggt |
6559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 13440504 - 13440331
Alignment:
| Q |
80 |
gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag |
179 |
Q |
| |
|
|||||||| || |||||||| ||||| |||||||||||||| |||| || ||||||||| |||| || || |||||||| ||||||||||| | |
|
|
| T |
13440504 |
gataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgagg |
13440405 |
T |
|
| Q |
180 |
aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt |
253 |
Q |
| |
|
| ||||| |||||||||| |||||| |||||||||||||||||||| | | || ||||||||| |||| |||| |
|
|
| T |
13440404 |
aagagaaagaaaagtggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggt |
13440331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 13448667 - 13448494
Alignment:
| Q |
80 |
gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag |
179 |
Q |
| |
|
|||||||| || || ||||| || ||||| ||||||||||| ||||| || ||||||||| |||| || || |||||||| |||||||| |||| |
|
|
| T |
13448667 |
gataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatgagagcgaag |
13448568 |
T |
|
| Q |
180 |
aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt |
253 |
Q |
| |
|
| ||||| ||||||||||||| ||| |||| ||||||||||| || || |||||||||||||| ||||||||| |
|
|
| T |
13448567 |
aagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggt |
13448494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 13455060 - 13454965
Alignment:
| Q |
158 |
gggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt |
253 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||| || ||| |||| ||||||| |||||| | || ||||||||||| ||||||||| |
|
|
| T |
13455060 |
gggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggt |
13454965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 12589984 - 12590189
Alignment:
| Q |
23 |
tcgaagcgacataactcagtgttgtacataagctttggaagcctctg-tcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcg |
121 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||| ||| | || | || |||| ||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
12589984 |
tcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcag-ataaacaactttatgagatttcgtgtggcatagaagcatca |
12590082 |
T |
|
| Q |
122 |
ggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaa |
221 |
Q |
| |
|
|| || || || |||||||||||||| || || ||||| || ||||||||||| ||||| || ||||| ||||| || | |||| |||||||||| |
|
|
| T |
12590083 |
ggccacgaattcgtatgggttattcccgagaaaaaagggaaggaagatgagagtgatgaggataaacaaaaatggttgcctagtggatttgaagagagaa |
12590182 |
T |
|
| Q |
222 |
acattgg |
228 |
Q |
| |
|
||||||| |
|
|
| T |
12590183 |
acattgg |
12590189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 226
Target Start/End: Original strand, 12483336 - 12483482
Alignment:
| Q |
80 |
gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag |
179 |
Q |
| |
|
|||||||||||||| || ||| | || | |||||||||||||||| | | || ||||||||| |||| || || ||||| || |||||||| || | |
|
|
| T |
12483336 |
gataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctgagaaaaaagggaaggaagatgagagcgatg |
12483435 |
T |
|
| Q |
180 |
aggagaagcaaaagtggttaccaaagagattcgaagagagaaacatt |
226 |
Q |
| |
|
||||||| |||||||||| || ||| |||| || |||||||||||| |
|
|
| T |
12483436 |
aggagaaagaaaagtggttgccgaagggatttgaggagagaaacatt |
12483482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 3417402 - 3417575
Alignment:
| Q |
80 |
gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag |
179 |
Q |
| |
|
|||||||| || ||||||||||| | |||||||||||||||||||| || ||||||||| ||| || || || ||||| ||||||| |||| |
|
|
| T |
3417402 |
gataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaag |
3417501 |
T |
|
| Q |
180 |
aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt |
253 |
Q |
| |
|
| ||||| |||||||||| || ||| |||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3417502 |
aagagaaagaaaagtggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggt |
3417575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 28385638 - 28385465
Alignment:
| Q |
80 |
gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag |
179 |
Q |
| |
|
|||||||| || ||||||||||| || ||| |||||||||| ||||| || ||||||||| |||| || || |||||||| ||||||| |||| |
|
|
| T |
28385638 |
gataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatgagatcgaag |
28385539 |
T |
|
| Q |
180 |
aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt |
253 |
Q |
| |
|
| ||||| |||||||| | |||||| |||| || |||||||||||||||||||||||||| || || |||||| |
|
|
| T |
28385538 |
aagagaaagaaaagtggctgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggt |
28385465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 12540911 - 12540816
Alignment:
| Q |
158 |
gggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt |
253 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| |||||||| | || ||| |||| || ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
12540911 |
gggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggt |
12540816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 12641353 - 12641495
Alignment:
| Q |
80 |
gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag |
179 |
Q |
| |
|
|||||||| ||||| ||||||||| | | ||||||| || ||||| || ||| |||||||| |||| || || |||||| | ||||||||||||| |
|
|
| T |
12641353 |
gataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaag |
12641452 |
T |
|
| Q |
180 |
aggagaagcaaaagtggttaccaaagagattcgaagagagaaa |
222 |
Q |
| |
|
||||||| |||||||||| || || |||||||||||||||| |
|
|
| T |
12641453 |
aggagaaagaaaagtggttgcctaaaggattcgaagagagaaa |
12641495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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