View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6103_low_24 (Length: 251)

Name: NF6103_low_24
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6103_low_24
NF6103_low_24
[»] chr5 (4 HSPs)
chr5 (13-249)||(20708465-20708699)
chr5 (36-226)||(34854427-34854615)
chr5 (45-144)||(11467330-11467429)
chr5 (37-119)||(25950040-25950122)
[»] chr1 (1 HSPs)
chr1 (59-251)||(12083300-12083490)
[»] chr7 (1 HSPs)
chr7 (37-148)||(2242630-2242740)
[»] chr4 (2 HSPs)
chr4 (38-221)||(33571528-33571712)
chr4 (37-131)||(36457553-36457647)
[»] scaffold0007 (1 HSPs)
scaffold0007 (37-185)||(172195-172340)
[»] chr8 (1 HSPs)
chr8 (41-120)||(31287205-31287283)
[»] chr3 (1 HSPs)
chr3 (36-115)||(20407941-20408020)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 20708465 - 20708699
Alignment:
Q  13 attctagaaatcgttaaataaaacggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacc 112  Q
    ||||||||||||||||  ||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||| |  |||||||||||    
T  20708465 attctagaaatcgttaggtaagacggagatagattaactccgataaacggtgctttgtttaccccttcttacacgtcccgtcgtagacggagaatccacc 20708564  T
Q  113 tagctagagtaaatcctaagatttccactcaacttatcagtcatctaaacaattatatgagacattaacatatctctgacaaggaatgtccaatttcaca 212  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||    
T  20708565 tagctaggctaaatcctaagatttacactcaacttatcagtcatctaaacaat--tatgagacattaacatattactgacaaggaatgtccaatttcaca 20708662  T
Q  213 tcgaattcaccttttgatctaccatcatcttttcatg 249  Q
    ||||||||||||||||||| |||||||||||||||||    
T  20708663 tcgaattcaccttttgatcaaccatcatcttttcatg 20708699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 34854615 - 34854427
Alignment:
Q  36 cggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagatt 135  Q
    |||||||||||||||||| ||||| |||| | ||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |  | |||||| | |    
T  34854615 cggagatagattaactccgataaatggtgtcccgtttaccccttcttgcacgtcccgtcgtagatagagaatccacctagctagggagagtcctaatact 34854516  T
Q  136 tccactcaacttatcagtcatctaaacaattatatgagacattaacatatctctgacaaggaatgtccaatttcacatcgaattcaccttt 226  Q
     ||||||| |||||||||||||||||||||  ||||||||||| ||||||  |  | ||| ||||||||| ||||||||||||||||||||    
T  34854515 cccactcatcttatcagtcatctaaacaat--tatgagacatttacatattacatataagaaatgtccaaattcacatcgaattcaccttt 34854427  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 11467330 - 11467429
Alignment:
Q  45 attaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagatttccactcaa 144  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||| ||||| |  |||||||||||| ||||| |  |||||||| ||| | ||||||    
T  11467330 attaactccgataaacggtgccccgtttaccccttcttacacgtcccgtcgtagacggagaatccacctggctagggcgaatcctaatattcctactcaa 11467429  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 25950040 - 25950122
Alignment:
Q  37 ggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctag 119  Q
    ||||||||||||||||| |||| | ||| |||||||| |||||||||||| | || ||||| |  | | ||||||||||||||    
T  25950040 ggagatagattaactccgataagcagtgtctcgtttatcccttcttacacattccgtcgtagacggtgtatccacctagctag 25950122  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 12083490 - 12083300
Alignment:
Q  59 acggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagatttccactcaacttatcagtcatct 158  Q
    ||||||||  |||||||| ||||||||  ||| |  ||| | |||||||||| ||||||||    |||||||| ||| | ||||||||||| |||| |||    
T  12083490 acggtgccctgtttaccctttcttacatttccaactgtagacagagaatccatctagctaggacgaatcctaatattcctactcaacttatgagtcgtct 12083391  T
Q  159 aaacaattatatgagacattaacatatctctgacaaggaatgtccaatttcacatcgaattcaccttttgatctaccatcatcttttcatgta 251  Q
    || |||||||  |||||||||||||||  | ||||||||||  ||||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  12083390 aaccaattat--gagacattaacatattacggacaaggaatacccaatttcacatcgaattcacctttagatcaaccatcatcatttcatgta 12083300  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 2242740 - 2242630
Alignment:
Q  37 ggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagattt 136  Q
    ||||||||||| ||||| ||||||| |||| |||||| ||||||||||||||||| || || |  |||||||||||||||||| || |||||||| |||     
T  2242740 ggagatagatttactccgataaacgatgcc-cgtttatcccttcttacacgtcccgtcatagacggagaatccacctagctagggtgaatcctaatattc 2242642  T
Q  137 ccactcaactta 148  Q
    ||||||||||||    
T  2242641 ccactcaactta 2242630  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 221
Target Start/End: Complemental strand, 33571712 - 33571528
Alignment:
Q  38 gagatagattaactccaataaacgg--tgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagatt 135  Q
    |||||||||||||||  |||||| |  ||||  |||||||||||||||||||||| |||||| |  ||| |||||||||| |||   |||| |||| |||    
T  33571712 gagatagattaactctgataaacagagtgccctgtttaccccttcttacacgtcctatcgtagacggaggatccacctagttaggacaaatactaatatt 33571613  T
Q  136 tccac-tcaacttatcagtcatctaaacaattatatgagacattaacatatctctgacaaggaatgtccaatttcacatcgaattca 221  Q
     |||| | |||||| || | |||||||||||   |||||||||||||||||| | |||||| |||| | || ||||||| |||||||    
T  33571612 cccacataaacttaccatttatctaaacaat--catgagacattaacatatcgcagacaagaaatggctaagttcacatagaattca 33571528  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 36457647 - 36457553
Alignment:
Q  37 ggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaa 131  Q
    ||||||||||||||||| |||||| ||||  ||||||||||||||||||| |||| || || || ||||||||| |||  ||| || ||||||||    
T  36457647 ggagatagattaactccgataaacagtgctccgtttaccccttcttacacatcccgtcatagatggagaatccatctaattagggtgaatcctaa 36457553  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 172340 - 172195
Alignment:
Q  37 ggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagattt 136  Q
    ||||||||||||||||| |||||||||| | ||||||||| ||| |||| ||    ||||| |  ||||||| |||| |  || | ||||||||| ||||    
T  172340 ggagatagattaactccgataaacggtgtcccgtttaccctttcctacatgtttagtcgtagacggagaatc-accttgaaagggcaaatcctaatattt 172242  T
Q  137 ccactcaacttatcagtcatctaaacaattatatgagacattaacatat 185  Q
    ||||||||||||||| ||||||||| |||   |||| ||||||||||||    
T  172241 ccactcaacttatcaatcatctaaagaat--catgaaacattaacatat 172195  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 31287283 - 31287205
Alignment:
Q  41 atagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctaga 120  Q
    |||||||||||   |||||||||||| | |||||||||||||||| ||||| | |||   ||||||||||||||||||||    
T  31287283 atagattaactttgataaacggtgcc-catttaccccttcttacatgtcccgtggtagtaagagaatccacctagctaga 31287205  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 20407941 - 20408020
Alignment:
Q  36 cggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctag 115  Q
    |||||||||||||| || |||||||  |  ||| ||||||||||||||||| |||||| ||| || || |||||||||||    
T  20407941 cggagatagattaaatctaataaacaatatctcttttaccccttcttacacttcccattgtagatggaaaatccacctag 20408020  T

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