View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6103_low_26 (Length: 227)
Name: NF6103_low_26
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_low_26 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22121576 - 22121802
Alignment:
| Q |
1 |
tcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22121576 |
tcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatatc |
22121675 |
T |
|
| Q |
101 |
ctgatatatatgattgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacacagaacaatataatta |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
22121676 |
ctgatatatatgatcgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatta |
22121775 |
T |
|
| Q |
201 |
aaaacccagaccaatataattaagaac |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22121776 |
aaaacccagaccaatataattaagaac |
22121802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40512897 - 40512671
Alignment:
| Q |
1 |
tcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40512897 |
tcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatatc |
40512798 |
T |
|
| Q |
101 |
ctgatatatatgattgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacacagaacaatataatta |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
40512797 |
ctgatatatatgatcgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatta |
40512698 |
T |
|
| Q |
201 |
aaaacccagaccaatataattaagaac |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40512697 |
aaaacccagaccaatataattaagaac |
40512671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University