View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6103_low_3 (Length: 725)

Name: NF6103_low_3
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6103_low_3
NF6103_low_3
[»] chr8 (1 HSPs)
chr8 (14-706)||(37500949-37501641)


Alignment Details
Target: chr8 (Bit Score: 689; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 14 - 706
Target Start/End: Complemental strand, 37501641 - 37500949
Alignment:
Q  14 aggccaagaagcaatatcctgaatgaaagggattttctcagtcctcatcaaatgaacaatcagagtttgcatcagaagaccctcaatgaaccaagctgaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37501641 aggccaagaagcaatatcctgaatgaaagggattttctcagtcctcatcaaatgaacaatcagagtttgcatcagaagaccctcaatgaaccaagctgaa 37501542  T
Q  114 tgaaaaaatttcatatcatcataagccttgcaataaaaccaaagaaacaaaagtgttgccacgtcacataaaatgcataccggtccattccacaatatga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37501541 tgaaaaaatttcatatcatcataagccttgcaataaaaccaaagaaacaaaagtgttgccacgtcacataaaatgcataccggtccattccacaatatga 37501442  T
Q  214 acatcggcaagcctcgcacggaccacttatgaggagtgttcaaatattcttcatccattttgtcccaagggatgacgatttgtccaaggctatagatgaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37501441 acatcggcaagcctcgcacggaccacttatgaggagtgttcaaatattcttcatccattttgtcccaagggatgacgatttgtccaaggctatagatgaa 37501342  T
Q  314 attctgtgtaagtagctgtctagaagtcaagggctcatattttaggaacaatgttgctatgaggagtgaaatgatacttcccaagttagcaataaccgac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37501341 attctgtgtaagtagctgtctagaagtcaagggctcatattttaggaacaatgttgctatgaggagtgaaatgatacttcccaagttagcaataaccgac 37501242  T
Q  414 atctttaagtacttcattgtgttgccaaaggtgagacgaccgtgctccacgcccgcaacgagcacgtatagatctttctctagtaagattatgtctgcca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37501241 atctttaagtacttcattgtgttgccaaaggtgagacgaccgtgctccacgcccgcaacgagcacgtttagatctttctctagtaagattatgtctgcca 37501142  T
Q  514 tgtctttggcaatggctacgccggagtccactgaaatgcttacatgagcagcatccaaagctagtgaatcattcacaccgtctcctaagaaaccaacaac 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37501141 tgtctttggcaatggctacgccggagtccactgaaatgcttacatgagcagcatccaaagctagtgaatcattcacaccgtctcctaagaaaccaacaac 37501042  T
Q  614 atggtttccttttgtctgcaatgattgcacgactcgaagtttttgactaggggtgagacgggctagcaccgttgctcttttaacggtttcatg 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37501041 atggtttccttttgtctgcaatgattgcacgactcgaagtttttgactaggggtgagacgggctagcaccgttgctcttttaacggtttcatg 37500949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University