View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6103_low_5 (Length: 493)
Name: NF6103_low_5
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6103_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 483
Target Start/End: Original strand, 9250988 - 9251452
Alignment:
| Q |
20 |
aagcacttctctcagccagccaaagtaatccataaaattatcccctnnnnnnntgtagtcgtaaaattttaagaagcaattagaatttgtaaatttgtga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||| |
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| T |
9250988 |
aagcacttctctcagccagccaaagtaatccataaaattatcccctaaaaaaatgtagtcataaaattttaagcagcagttagaatttgtaaatttgtga |
9251087 |
T |
|
| Q |
120 |
atatgtgtgtcttatgttgtatccctaaactatttcaggtatttcatccttaactctgt--ttatctactcttggccatgatttgtcctggtggtgtttg |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9251088 |
atatgtgtgtcttatgttgtatgcctaaactatttcaggtatttcatccttaactctgtgtttatctactcttggccatgatttgtcctggtggtgtttg |
9251187 |
T |
|
| Q |
218 |
ctgttgctcnnnnnnnctacttcttccacaannnnnnnnctcnnnnnnnnttattattagtggagaaattccattgaaatctcgcgagtgccattggtgt |
317 |
Q |
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||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9251188 |
ctgttgctctttttttctacttcttccacaattttttt-ctcaaaaataattattattagtggagaaattccattgaaatctcgcgagtgccattggtgt |
9251286 |
T |
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| Q |
318 |
acgcctccaatgatggctccaaattgtttcatagcaagcatggtaccctatttttgcttgttagcccaaatcaagcattatagcctatttttccacctct |
417 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9251287 |
acgcctccaatgatggctccaaattgtttcctagcaagcatggtaccctatttttgcttgttagcccaaatcaagcatggtagcctatttttccacctct |
9251386 |
T |
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| Q |
418 |
attgggataatcgtgcatatgcttccttattggtcctagtttcaattagtggccgtttttcctttg |
483 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9251387 |
aatgggataatcgtgcatatgcttccttattggtcctagtttcaattagtggccgtttttcctttg |
9251452 |
T |
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