View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6103_low_6 (Length: 489)

Name: NF6103_low_6
Description: NF6103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6103_low_6
NF6103_low_6
[»] chr1 (5 HSPs)
chr1 (158-469)||(32863427-32863739)
chr1 (158-460)||(28456121-28456423)
chr1 (14-157)||(32863763-32863908)
chr1 (8-90)||(28455791-28455873)
chr1 (70-157)||(28456011-28456097)
[»] chr8 (4 HSPs)
chr8 (158-469)||(33995212-33995524)
chr8 (158-469)||(35701004-35701316)
chr8 (8-157)||(33995548-33995696)
chr8 (8-157)||(35700832-35700980)
[»] chr3 (5 HSPs)
chr3 (158-469)||(48022918-48023230)
chr3 (158-390)||(10439936-10440169)
chr3 (8-157)||(48022746-48022894)
chr3 (29-93)||(10440267-10440331)
chr3 (102-157)||(10440193-10440249)
[»] chr7 (2 HSPs)
chr7 (158-460)||(24484502-24484804)
chr7 (8-157)||(24484330-24484478)
[»] chr4 (7 HSPs)
chr4 (170-469)||(45344437-45344738)
chr4 (323-469)||(20001650-20001797)
chr4 (8-157)||(19997792-19997939)
chr4 (8-157)||(45344246-45344402)
chr4 (158-280)||(19997963-19998076)
chr4 (346-458)||(23242297-23242410)
chr4 (46-86)||(8089964-8090004)
[»] chr5 (4 HSPs)
chr5 (208-469)||(30328064-30328327)
chr5 (8-76)||(30328654-30328722)
chr5 (158-216)||(30328510-30328568)
chr5 (102-157)||(30328592-30328646)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 158 - 469
Target Start/End: Complemental strand, 32863739 - 32863427
Alignment:
Q  158 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||    
T  32863739 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataataagaagaaggtatatatagttaacaagaaaagttgaattg 32863640  T
Q  258 catcggtaataactaatgatgggcttcggcaggccagcacataaataaatccgatagnnnnnnnntgtgtgcctaaatctacgaacaaatttcaaagtca 357  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||        |||||||||||||||||||||| ||||||||||||    
T  32863639 catcggtaataactaatgatgggctccggcaggccagcacataaataaatccaatagaaaaaagatgtgtgcctaaatctacgaacatatttcaaagtca 32863540  T
Q  358 gatgcaaaggaagtgcaaaatagaaaactgaggggattcaacgtaaaaatataatagcatagaagtgcaaaattataaatgtgaggaggtgcatgtgcat 457  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32863539 gatgcaaaggaggtgcaaaatagaaaactgaggggattcaacataaaaatataatagcatagaagtgcaaaattataaatgtgaggaggtgcatgtgcat 32863440  T
Q  458 -ccctgaggtgaa 469  Q
     ||||||||||||    
T  32863439 cccctgaggtgaa 32863427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 158 - 460
Target Start/End: Original strand, 28456121 - 28456423
Alignment:
Q  158 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattg 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  28456121 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaatgtaaatatagtcaacaagaaaagatgaattg 28456220  T
Q  258 catcggtaataactaatgatgggcttcggcaggccagcacataaataaatccgatagnnnnnnnntgtgtgcctaaatctacgaacaaatttcaaagtca 357  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||        || ||| ||||||||||||| ||||||||||||||    
T  28456221 catcagtaataactaatgatgggctacggcaagccagcacataaataaatccaatagaaaaaagatgagtgactaaatctacgaaaaaatttcaaagtca 28456320  T
Q  358 gatgcaaaggaagtgcaaaatagaaaactgaggggattcaacgtaaaaatataatagcatagaagtgcaaaattataaatgtgaggaggtgcatgtgcat 457  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28456321 gatgcaaaggaggtgcaaaatagaaaactgaggggattcaacataaaaatataatagcatagtagtgcaaaattataaatgtgaggaggtgcatgtgcat 28456420  T
Q  458 ccc 460  Q
    |||    
T  28456421 ccc 28456423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 32863908 - 32863763
Alignment:
Q  14 atatagagaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataaga---nnnnnnnnatgaaatat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||           |||||||||    
T  32863908 atatagagaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaataagattggtataagatttttttttttatgaaatat 32863809  T
Q  111 gagttataaataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  32863808 gagttataaataacacttgcgtgcatcaacc-aatatgattcgtatg 32863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 28455791 - 28455873
Alignment:
Q  8 ccaagaatatagagaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtata 90  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28455791 ccaataatatagacaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtata 28455873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 28456011 - 28456097
Alignment:
Q  70 aataaaaatgagattggtataagannnnnnnnatgaaatatgagttataaataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
    ||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28456011 aataaaattgagattggtataagactttttttatgaaatatgagttataaataacacttgcgcgcatcaacc-aatatgattcgtatg 28456097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 158 - 469
Target Start/End: Complemental strand, 33995524 - 33995212
Alignment:
Q  158 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattg 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33995524 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagctgaattg 33995425  T
Q  258 catcggtaataactaatgatgggcttcggcaggccagcacataaataaatccgatagnnnnnnnntgtgtgcctaaatctacgaacaaatttcaaagtca 357  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||        |||||| ||||||||||||||||||||||||||||    
T  33995424 catcggtaataactaatgatgggctccggcaagccagcacataaataaatccaatagaaaaaagatgtgtgtctaaatctacgaacaaatttcaaagtca 33995325  T
Q  358 gatgcaaaggaagtgcaaaatagaaaactgaggggattcaacgtaaaaatataatagcatagaagtgcaaaattataaatgtgaggaggtgcatgtgcat 457  Q
    |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33995324 gatgcataggaggtgcaaaatagaaaactgaggggattcaacataaaaatataatagcatagtagtgcaaaattataaatgtgaggaggtgcatgtgcat 33995225  T
Q  458 -ccctgaggtgaa 469  Q
     ||||||||||||    
T  33995224 cccctgaggtgaa 33995212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 158 - 469
Target Start/End: Original strand, 35701004 - 35701316
Alignment:
Q  158 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  35701004 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataataagaagaaggtaaatataatcaacaagaaaagctgaattg 35701103  T
Q  258 catcggtaataactaatgatgggcttcggcaggccagcacataaataaatccgatagnnnnnnnntgtgtgcctaaatctacgaacaaatttcaaagtca 357  Q
    ||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||        ||||||  |||||||||||||||||||||||||||    
T  35701104 catcggtaataactaatgatgggctccggcaagtcagcacataaataaatccaatagaaaaaagatgtgtgtttaaatctacgaacaaatttcaaagtca 35701203  T
Q  358 gatgcaaaggaagtgcaaaatagaaaactgaggggattcaacgtaaaaatataatagcatagaagtgcaaaattataaatgtgaggaggtgcatgtgcat 457  Q
    |||||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35701204 gatgcataggaggtgcaaaatagaaatctgaggggattcaacataaaaatataatagcatagtagtgcaaaattataaatgtgaggaggtgcatgtgcat 35701303  T
Q  458 -ccctgaggtgaa 469  Q
     ||||||||||||    
T  35701304 cccctgaggtgaa 35701316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 33995696 - 33995548
Alignment:
Q  8 ccaagaatatagagaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagannnnnnnnatgaaa 107  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  33995696 ccaataatatagagaagtaatatcatcaatactttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagattttttttatgaaa 33995597  T
Q  108 tatgagttataaataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33995596 tatgagttataaataacacttgcgcgcatcaacc-aatatgattcgtatg 33995548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 35700832 - 35700980
Alignment:
Q  8 ccaagaatatagagaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagannnnnnnnatgaaa 107  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  35700832 ccaataatatagataagtaatatcatcaatactttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagattttttttatgaaa 35700931  T
Q  108 tatgagttataaataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35700932 tatgagttataaataacacttgcgcgcatcaacc-aatatgattcgtatg 35700980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 158 - 469
Target Start/End: Original strand, 48022918 - 48023230
Alignment:
Q  158 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  48022918 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataataagaagaaggtaaatatagtcaacaagaaaagctgaattg 48023017  T
Q  258 catcggtaataactaatgatgggcttcggcaggccagcacataaataaatccgatagnnnnnnnntgtgtgcctaaatctacgaacaaatttcaaagtca 357  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||        |||||| ||||||||||||||||||||||||||||    
T  48023018 catcggtaataactaatgatgggctccggcaagccagcacataaataaatccaatagaaaaaagatgtgtgtctaaatctacgaacaaatttcaaagtca 48023117  T
Q  358 gatgcaaaggaagtgcaaaatagaaaactgaggggattcaacgtaaaaatataatagcatagaagtgcaaaattataaatgtgaggaggtgcatgtgcat 457  Q
    |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48023118 gatgcataggaggtgcaaaatagaaaactgaggggattcaacataaaaatataatagcatagtagtgcaaaattataaatgtgaggaggtgcatgtgcat 48023217  T
Q  458 -ccctgaggtgaa 469  Q
     ||||||||||||    
T  48023218 cccctgaggtgaa 48023230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 158 - 390
Target Start/End: Complemental strand, 10440169 - 10439936
Alignment:
Q  158 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattg 257  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10440169 attcaatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattg 10440070  T
Q  258 catcggtaataactaatgatgggcttcggcaggccagcacataaataaatccgatag-nnnnnnnntgtgtgcctaaatctacgaacaaatttcaaagtc 356  Q
    ||||||||||| ||||| || || | | |||| ||||||||||||||||||| ||||         ||||||||||||||||| |||| |||||||||||    
T  10440069 catcggtaatatctaataataggttccagcagaccagcacataaataaatccaatagaaaaaaagatgtgtgcctaaatctacaaacagatttcaaagtc 10439970  T
Q  357 agatgcaaaggaagtgcaaaatagaaaactgagg 390  Q
    | |||||||||| |||||||||||||||||||||    
T  10439969 acatgcaaaggaggtgcaaaatagaaaactgagg 10439936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 48022746 - 48022894
Alignment:
Q  8 ccaagaatatagagaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagannnnnnnnatgaaa 107  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  48022746 ccaataatatagagaagtaatatcatcaatactttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagattttttttatgaaa 48022845  T
Q  108 tatgagttataaataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  48022846 tatgagttataaataacacttgcgtgcatcaacc-aatatgattcgtatg 48022894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 10440331 - 10440267
Alignment:
Q  29 atcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataaga 93  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  10440331 atcaccaataatatagaaaagaaaaagttttttaataaggtaataaaaatgagattgatataaga 10440267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 10440249 - 10440193
Alignment:
Q  102 atgaaatatgagttata--aataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||    
T  10440249 atgaaatatgagttatataaataacacttgcgcgcatcaacc-aatatgatttgtatg 10440193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 158 - 460
Target Start/End: Original strand, 24484502 - 24484804
Alignment:
Q  158 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  24484502 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaaaaaggtaaatatagtcaacaagaaaagctgaattg 24484601  T
Q  258 catcggtaataactaatgatgggcttcggcaggccagcacataaataaatccgatagnnnnnnnntgtgtgcctaaatctacgaacaaatttcaaagtca 357  Q
     |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||        |||||| ||||||||||||||||||||||||||||    
T  24484602 gatcggtaataactaatgatgggctccggcaagccagcacataaataaatccaatagaaaaaagatgtgtgtctaaatctacgaacaaatttcaaagtca 24484701  T
Q  358 gatgcaaaggaagtgcaaaatagaaaactgaggggattcaacgtaaaaatataatagcatagaagtgcaaaattataaatgtgaggaggtgcatgtgcat 457  Q
    |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24484702 gatgcataggaggtgcaaaatagaaaactgaggggattcaacataaaaatataatagcatagtagtgcaaaattataaatgtgaggaggtgcatgtgcat 24484801  T
Q  458 ccc 460  Q
    |||    
T  24484802 ccc 24484804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 24484330 - 24484478
Alignment:
Q  8 ccaagaatatagagaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagannnnnnnnatgaaa 107  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  24484330 ccaataatatagagaagtaatatcatcaatactttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagattttttttatgaaa 24484429  T
Q  108 tatgagttataaataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  24484430 tatgagttataaataacacttgcgagcatcaacc-aatatgattcgtatg 24484478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 170 - 469
Target Start/End: Original strand, 45344437 - 45344738
Alignment:
Q  170 gagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattgcatcggtaataa 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45344437 gagattcattcttggtattttagtaaataattattataatataataataagaagaaggtaaatatagtcaacaagaaaagctgaattgcatcggtaataa 45344536  T
Q  270 ctaatgatgggcttcggcaggccagcacataaataaatccgatagnnnnnnnntgtgtgcctaaatctacgaacaaatttcaaagtcagatgcaaaggaa 369  Q
    ||||||||||| | | |||||||||||||||||||||||  ||||        ||  ||||||||||||||||||||||||||||||||||||||||||     
T  45344537 ctaatgatgggttccagcaggccagcacataaataaatctaatagaaaaaagatgcatgcctaaatctacgaacaaatttcaaagtcagatgcaaaggag 45344636  T
Q  370 gtgcaaaatagaaaactgaggggattcaacgtaaaaatataatagcatag-aagtgcaaaattataaatgtgaggaggtgcatgtgcat-ccctgaggtg 467  Q
    ||||||||||||||||| |||||||||||| ||||||||||| || |||| | ||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  45344637 gtgcaaaatagaaaacttaggggattcaacataaaaatataacagtatagtaggtgcaaaattataaatgggagggggtgcatgtgcatcccctgaggtg 45344736  T
Q  468 aa 469  Q
    ||    
T  45344737 aa 45344738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 323 - 469
Target Start/End: Original strand, 20001650 - 20001797
Alignment:
Q  323 tgtgtgcctaaatctacgaacaaatttcaaagtcagatgcaaaggaagtgcaaaatagaaaactgaggggattcaacgtaaaaatataatagcatagaag 422  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  20001650 tgtgtgcctaaatctacgaacaaatttcaaagtcagatgcataggaggtgcaaaatagaaaactgaggggattcaacataaaaatataatagcatagtag 20001749  T
Q  423 tgcaaaattataaatgtgaggaggtgcatgtgcat-ccctgaggtgaa 469  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  20001750 tgcaaaattataaatgtgaggaggtgcatgtacatcccctgaggtgaa 20001797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 19997792 - 19997939
Alignment:
Q  8 ccaagaatatagagaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagannnnnnnnatgaaa 107  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  19997792 ccaataatatagagaagtaatatcatcaatactttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataaga-tttttttatgaaa 19997890  T
Q  108 tatgagttataaataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  19997891 tatgagttataaataacacctgcgcgcatcaacc-aatatgattcgtatg 19997939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 45344246 - 45344402
Alignment:
Q  8 ccaagaatatagagaagtaatatcatcaata---atttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataaga-----nnnnnn 99  Q
    |||| |||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  45344246 ccaataatatagaaaagtaatatcatcaataataatttagaaaagaaaaagttttttaacaaggtaataaaaatgagattggtataagattttttttttt 45344345  T
Q  100 nnatgaaatatgagttataaataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
      |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45344346 ttatgaaatatgagttataaataacacttgcgcgcatcaacc-aatatgattcgtatg 45344402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 158 - 280
Target Start/End: Original strand, 19997963 - 19998076
Alignment:
Q  158 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattg 257  Q
    |||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  19997963 attcgatagccggagattcattcttggtattttagtaaataa---------tataataagaagaagaaggtaaatatagtcaacaaaaaaagctgaattg 19998053  T
Q  258 catcggtaataactaatgatggg 280  Q
    |||||||||||||||||||||||    
T  19998054 catcggtaataactaatgatggg 19998076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 458
Target Start/End: Complemental strand, 23242410 - 23242297
Alignment:
Q  346 atttcaaagtcagatgcaaaggaagtgcaaaatagaaaactgaggggattcaacgtaaaaatataatagcatag-aagtgcaaaattataaatgtgagga 444  Q
    |||| ||||| |||||||||||| |||||||  |||||| | ||||||||||||||| ||||| ||||| |||| | ||||||||||| ||| |||||||    
T  23242410 attttaaagtaagatgcaaaggaggtgcaaataagaaaattaaggggattcaacgtagaaatacaatagaatagtaggtgcaaaattacaaacgtgagga 23242311  T
Q  445 ggtgcatgtgcatc 458  Q
    |||| |||||||||    
T  23242310 ggtgtatgtgcatc 23242297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 8089964 - 8090004
Alignment:
Q  46 aaagaaaaagttttttaacaaggtaataaaaatgagattgg 86  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  8089964 aaagtaaaagttttttaacaaggtaataaaaatgagattgg 8090004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 208 - 469
Target Start/End: Complemental strand, 30328327 - 30328064
Alignment:
Q  208 atataataagaagaagaaggtaaatatagtcaacaagaaaagttgaattgcatcggtaataactaatgatgggcttcggcaggccagcacataaataaat 307  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  ||| | | ||||||||||||||||||||||    
T  30328327 atataataataagaagaaggtaaatatagtcgacaagaaaagctgaattgcatcggtaataactaatggcgggttccagcaggccagcacataaataaat 30328228  T
Q  308 ccgatagnnnnnnnntgtgtgcctaaatctacgaacaaatttcaaagtcagatgcaaaggaagtgcaaaatagaaaactgaggggattcaacgtaaaaat 407  Q
    || ||||        |||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||    
T  30328227 ccaatagaaaaaagatgtgtgcctaaatctacgaacatattttaaagtcagatgcaaaggaggtgcaaaatagaaaattgaggggattcaacataaaaat 30328128  T
Q  408 ataatagcatag-aagtgcaaaattataaatgtgaggaggtgcatgtgcat-ccctgaggtgaa 469  Q
    |||||||||||| | ||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  30328127 ataatagcatagtaggtgcaaaattataatagtgaggaggtgcatgtgcatcccctgaggtgaa 30328064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 30328722 - 30328654
Alignment:
Q  8 ccaagaatatagagaagtaatatcatcaataatttagaaaagaaaaagttttttaacaaggtaataaaa 76  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30328722 ccaataatatagaaaagtaatatcatgaataatttagaaaagaaaaagttttttaacaaggtaataaaa 30328654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 30328568 - 30328510
Alignment:
Q  158 attcgatagcaggagattcattcttggtattttagtaaataattattataatataataa 216  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  30328568 attcaatagcaggagattcaatcttggtatttcagtaaataattattataatataataa 30328510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 30328646 - 30328592
Alignment:
Q  102 atgaaatatgagttataaataacacttgcgcgcatcaaccaaatatgattcgtatg 157  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  30328646 atgaaatatgagttataaataacacttgcgcgcatcaacc-aatctgattcgtatg 30328592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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