View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6104_high_1 (Length: 422)
Name: NF6104_high_1
Description: NF6104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6104_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 33768253 - 33767862
Alignment:
| Q |
16 |
catataggccctagagtttccatagctagcttcttctcaaacccggtagaggtttcatccaaggtccttggtccaataaaggaattgttatcagaagaaa |
115 |
Q |
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| T |
33768253 |
catataggccctagagtttccatagctagcttcttcgcaaactcggtagaggtttcatccaaggtccttggtccaataaaggaattgttatcagaagaaa |
33768154 |
T |
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| Q |
116 |
atccgccaatctataggaatactactgtgaaagaagtgttggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtg |
215 |
Q |
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| T |
33768153 |
atccggcaatctatagggatactactgtgaaagaagtgttggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtg |
33768054 |
T |
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| Q |
216 |
aattcagaataagattggagcagtatcaattgttgtggtgttgttggattttattatggttaacttctacttcaactatgattttcagtatgtagggaat |
315 |
Q |
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| T |
33768053 |
aattcagaataagattggagcagtatcaattgttgtggtgttgttggattttattatggttaacttctacttcaactatgattttcagtatgtagggaat |
33767954 |
T |
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| Q |
316 |
aaattgtacacacactatcaagcaatgtagcaccgacacttcatattaaaagtgtacctgcggttacatttaataactttcattttcttatc |
407 |
Q |
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| T |
33767953 |
aaattgtacacacactatcaagcaatgtagcaccgacacttcatattaaaagtgtacctgtggttacatttaataactttcattttcttatc |
33767862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 64 - 210
Target Start/End: Complemental strand, 33761610 - 33761464
Alignment:
| Q |
64 |
gaggtttcatccaaggtccttggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaagtgttggcacatt |
163 |
Q |
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| T |
33761610 |
gaggttacatccaaggttgttgctccaataaaggaattgctatcagaagaaaatccaccaatctatagggacactactttgaaagaagtcttggcacatt |
33761511 |
T |
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| Q |
164 |
attttacaaaaggccttgatgggaactcttccttgcaccctttcagg |
210 |
Q |
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| T |
33761510 |
attttacaaaaggccttgatggtaactcttccttgcaccctttcagg |
33761464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 33771005 - 33770857
Alignment:
| Q |
71 |
catccaaggtccttggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaagtgttggcacattattttac |
170 |
Q |
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| T |
33771005 |
catccaaggttgttggtccaataaatgaattgttatcagaagaaaatccaccaatctatagggacactactgtgaatgatttcttggcacattattatga |
33770906 |
T |
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| Q |
171 |
aaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaatt |
219 |
Q |
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| T |
33770905 |
aaaatctcttgatgggagctcttccttgcagcctttcagagtgtgaatt |
33770857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 49463192 - 49463125
Alignment:
| Q |
154 |
ttggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattca |
221 |
Q |
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| T |
49463192 |
ttggcacattattatgcaaaaggccttgatgggaactcttccttgcagcccttcaagttgtgaattca |
49463125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 41242344 - 41242410
Alignment:
| Q |
84 |
tggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaa |
150 |
Q |
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| T |
41242344 |
tggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaa |
41242410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 28130725 - 28130791
Alignment:
| Q |
84 |
tggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaa |
150 |
Q |
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| T |
28130725 |
tggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaa |
28130791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 19892129 - 19892189
Alignment:
| Q |
161 |
attattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattca |
221 |
Q |
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|||||| | |||||||||| ||||| |||||||||||| | || |||| |||||||||||| |
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| T |
19892129 |
attattatgcaaaaggcctagatggaaactcttccttggagcccttcaagttgtgaattca |
19892189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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