View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6104_low_1 (Length: 576)
Name: NF6104_low_1
Description: NF6104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6104_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 4 - 560
Target Start/End: Complemental strand, 11248244 - 11247676
Alignment:
| Q |
4 |
atggacatcatcacaaggagtccaaacagtgctctcaaaattcataacaatgactgaaagggataagagcaagaaaatggtgaatcaagaaacatatatg |
103 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11248244 |
atggccatcatcacaaggagttcaaacagtgctctcaaaattcagaacaatgactgaaagggataagagcaagaaaatggtgaatcaagaaacatatatg |
11248145 |
T |
|
| Q |
104 |
aatgaaagggttctaaaggccaaagagaaactgaagatacaaaggcatgacaacaaagagaaagagatggcaatgctgatgttccaatatctttatgaag |
203 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11248144 |
aaagaaagggttctaaaggccaaagagaaactgaagatgcaaaggcatgacaacaaagagaaagagatggcaatgctgatgtttcaatatctttatgaag |
11248045 |
T |
|
| Q |
204 |
gtaactttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttgattgaccagaaattgaaggaggttggtagaaggttgggagaaga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11248044 |
gtaactttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttgattgaccagaaattgaaggaggttggtagaaggttgggagaaga |
11247945 |
T |
|
| Q |
304 |
ggataataaggg------------tcaattccaaatggcaccaccattgacatccatgaatgaagaaatggcaaggatgggtcatggccatgctgtgatg |
391 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
11247944 |
ggataataatggtcaacatgaaattcaattccaaatggcaccaccattgacatccaggaacgaagaaatggcaaggatgggtcatggccatgctgggatg |
11247845 |
T |
|
| Q |
392 |
actgtgaataatggtgaaatcattgaaagtcaacttttgatgggcttgatgatgaatggtaatggagatgagacagttccatttggtgaggtcgatccta |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11247844 |
actgtgaataatggtgaaatcattgaaagtcaacttttgatgggcttgatgatgaatggtaatggagatgagacagttccatttggcgaggtcgatccta |
11247745 |
T |
|
| Q |
492 |
gatttttgcccaatataatgccttgaatgaatgcaggtatttgttttgcaaaccctttgaggtggatct |
560 |
Q |
| |
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| T |
11247744 |
gatttttgcccaatataatgccttgaatgaaatcaggtatttgttttgcaaaccctttgaggtggatct |
11247676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 9895178 - 9894890
Alignment:
| Q |
9 |
catcatcacaaggagtccaaacagtgctctcaaaa-ttcataacaatgactgaaagggataagagcaagaaaatggtgaatcaagaaacatatatgaatg |
107 |
Q |
| |
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||||| |||| |||||||||||||||||||||||| |||| ||||||| |||| |||| |||||| |||||||| |||| ||||| || ||||||| |
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| T |
9895178 |
catcaccacagggagtccaaacagtgctctcaaaaattcagaacaatgtctgagtgggagaagagccagaaaatgatgaaccaagagacttatatgatac |
9895079 |
T |
|
| Q |
108 |
aaagggttctaaaggccaaagagaaactgaagatacaaaggcatgacaacaaagagaaagagatggcaatgctgatgttccaatatctttatgaaggtaa |
207 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||||||||| ||| | ||||||||||||| ||||| ||||| |||| ||||| |||||| || |
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| T |
9895078 |
aaagggttctgaaggccaaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctcatgtttcaatgtctttgtgaaggcaa |
9894979 |
T |
|
| Q |
208 |
ctttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttgattgaccagaaattgaaggaggttggtagaaggttgg |
296 |
Q |
| |
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|| ||||||| |||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||||||| |
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| T |
9894978 |
attaatgcagaataatatctccttggttgattcaaaacatctttgttggttgattgaccaaaaatggaaggacgttagtagaaggttgg |
9894890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 330 - 540
Target Start/End: Original strand, 11108659 - 11108869
Alignment:
| Q |
330 |
caccaccattgacatccatgaatgaagaaatggcaaggatgggtcatggccatgctgtgatgactgtgaataatggtgaaatcattgaaagtcaactttt |
429 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||| || || ||||||||| || |||||||| |||| ||| |
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| T |
11108659 |
caccaccatttacatccagtaatgaagaaatggcaatgatgggtcctggccatgctggaatacctatgaataatgacgacgacattgaaattcaatcttt |
11108758 |
T |
|
| Q |
430 |
gatgggcttgatgatgaatggtaatggagatgagacagttccatttggtgaggtcgatcctagatttttgcccaatataatgccttgaatgaatgcaggt |
529 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||| |||||||| || ||||||||||| ||||||| ||| || | |||| ||||||| || || |
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| T |
11108759 |
catgggcttgatgatgaatagtaatggagatgagtcagtgccatttggcgaagtcgatcctagggttttgccaaatctactaccttaaatgaattcatgt |
11108858 |
T |
|
| Q |
530 |
atttgttttgc |
540 |
Q |
| |
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||||||||||| |
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| T |
11108859 |
atttgttttgc |
11108869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 11108554 - 11108660
Alignment:
| Q |
161 |
gagaaagagatggcaatgctgatgttccaatatctttatgaaggtaactttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttga |
260 |
Q |
| |
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||||| |||||| ||||||| ||| |||| ||||| |||| | || |||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
11108554 |
gagaaggagatgacaatgctcatgaatcaatgtctttttgaaagcaaatttatgcagaataatatgtcattggttgattcaaaacatcttttttggttga |
11108653 |
T |
|
| Q |
261 |
ttgacca |
267 |
Q |
| |
|
|||||| |
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|
| T |
11108654 |
ctgacca |
11108660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 429
Target Start/End: Complemental strand, 9894892 - 9894788
Alignment:
| Q |
327 |
tggcaccaccattgacatccatgaatgaagaaa--tggcaaggatgggtcatggccatgctgtgatgactgtgaataatggtgaaatcattgaaagtcaa |
424 |
Q |
| |
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||||||||||||||||||| | | ||||| ||| |||||| ||||||||||||| ||| || ||||||| |||| |||||||| ||||| ||||||||| |
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| T |
9894892 |
tggcaccaccattgacatctagggatgaaaaaaaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaagtcaa |
9894793 |
T |
|
| Q |
425 |
ctttt |
429 |
Q |
| |
|
|||| |
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|
| T |
9894792 |
atttt |
9894788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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