View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6105_high_5 (Length: 208)
Name: NF6105_high_5
Description: NF6105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6105_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 5249648 - 5249834
Alignment:
| Q |
5 |
atgtcgaagaatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgt |
104 |
Q |
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| T |
5249648 |
atgtctaataatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgt |
5249747 |
T |
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| Q |
105 |
tcaatcagctccttcccactatgccttggaattctctcatggtatgnnnnnnnnngttcccttcatgtactctgtttttcacaaatcat |
193 |
Q |
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| T |
5249748 |
tcaatcagctccttcccactatgccttggaattctctcatggtatg--tttttttgttcccttcatgtactctgtttttcacaaatcat |
5249834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 5268883 - 5269028
Alignment:
| Q |
5 |
atgtcgaagaatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgt |
104 |
Q |
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| T |
5268883 |
atgtctaataatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgt |
5268982 |
T |
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| Q |
105 |
tcaatcagctccttcccactatgccttggaattctctcatggtatg |
150 |
Q |
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| T |
5268983 |
tcaatcaactccttcccactatgcctttcaattctctcatggtatg |
5269028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5272900 - 5272755
Alignment:
| Q |
5 |
atgtcgaagaatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgt |
104 |
Q |
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| T |
5272900 |
atgtctaataatattgttattatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgt |
5272801 |
T |
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| Q |
105 |
tcaatcagctccttcccactatgccttggaattctctcatggtatg |
150 |
Q |
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| T |
5272800 |
tcaatcagctccttcccacaatgccttggaattccgtcatggtatg |
5272755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 5276859 - 5276726
Alignment:
| Q |
17 |
attgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctcc |
116 |
Q |
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| T |
5276859 |
attgttattgtttttgattttgacaaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactcc |
5276760 |
T |
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| Q |
117 |
ttcccactatgccttggaattctctcatggtatg |
150 |
Q |
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| T |
5276759 |
ttcctacaatgccttggaattctgttatggtatg |
5276726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 43110964 - 43110830
Alignment:
| Q |
14 |
aatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagc |
113 |
Q |
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| T |
43110964 |
aatattgttgtggtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaac |
43110865 |
T |
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| Q |
114 |
tccttcccactatgccttggaattctctcatggta |
148 |
Q |
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| T |
43110864 |
ttgttcccaccatgccatggaacaatctcatggta |
43110830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 26315854 - 26315722
Alignment:
| Q |
16 |
tattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctc |
115 |
Q |
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| T |
26315854 |
tattgtagtggttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactc |
26315755 |
T |
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| Q |
116 |
cttcccactatgccttggaattctctcatggta |
148 |
Q |
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| T |
26315754 |
tttcccaccatgccattgaactatctcatggta |
26315722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 43105463 - 43105366
Alignment:
| Q |
50 |
attgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccactatgccttggaattctctcatggt |
147 |
Q |
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| T |
43105463 |
attgaatgtgatagtgataattgggttcttgatgagtttggtttaactgagaaattctatcagcttcttcctagcatgctttggaatcctctcatggt |
43105366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 19569148 - 19569243
Alignment:
| Q |
36 |
ttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccactatgcctt |
131 |
Q |
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| T |
19569148 |
ttgataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctt |
19569243 |
T |
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