View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6105_low_3 (Length: 271)
Name: NF6105_low_3
Description: NF6105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6105_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 52210849 - 52211104
Alignment:
| Q |
1 |
agcattatggttatccaaaagctggatcagataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52210849 |
agcattatggttatccaaaagctgaatcagataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttca |
52210948 |
T |
|
| Q |
101 |
ggatattgaggctgcattcagcgtatgcacagtaaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacg |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52210949 |
ggataatgaggctgcattcagcgtatgcacagtaaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacg |
52211048 |
T |
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| Q |
201 |
cccagaaggagtttaactgctggatttattcatatatataggtttctagaggatgg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52211049 |
cccagaaggagtttaactgctggatttattcatatatataggtttctagaggatgg |
52211104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 4191290 - 4191545
Alignment:
| Q |
1 |
agcattatggttatccaaaagctggatcagataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191290 |
agcattatggttatccaaaagctgaatcagataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttca |
4191389 |
T |
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| Q |
101 |
ggatattgaggctgcattcagcgtatgcacagtaaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacg |
200 |
Q |
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| T |
4191390 |
ggataatgaggctgcattcagcggatgcacagtaaattttcatgataaagaatacggaactcttttagacgttggcacagcaaagggactgcaatttacg |
4191489 |
T |
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| Q |
201 |
cccagaaggagtttaactgctggatttattcatatatataggtttctagaggatgg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191490 |
cccagaaggagtttaactgctggatttattcatatatataggtttctagaggatgg |
4191545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 47716459 - 47716204
Alignment:
| Q |
1 |
agcattatggttatccaaaagctggatcagataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttca |
100 |
Q |
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|
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
47716459 |
agcattatggttatccaaaatctgaatcagataagtgggtatcctgcatcagagttcttgatccaaggacaggaaatacgacctgtcttttggagcttca |
47716360 |
T |
|
| Q |
101 |
ggatattgaggctgcattcagcgtatgcacagtaaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacg |
200 |
Q |
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||| | |||||||||||||||| ||||||| |||||||||||||| || ||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| |
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| T |
47716359 |
ggagaatgaggctgcattcagcatatgcactgtaaattttcatgacaaggaatacggaacccttttagctgttggtacagctaagggactgcagtttaca |
47716260 |
T |
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| Q |
201 |
cccagaaggagtttaactgctggatttattcatatatataggtttctagaggatgg |
256 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
47716259 |
cccaaaaggagtttaactgctggattcattcatatatataggtttctagatgatgg |
47716204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 47857624 - 47857879
Alignment:
| Q |
1 |
agcattatggttatccaaaagctggatcagataagtgggcatcctgcatcagaattcttgatccaaaaacaggaaatacaacctgtcttttggagcttca |
100 |
Q |
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||||||| || ||||||||| ||| |||||||||||||| ||||||||||||| |||||||||||| ||||||||||| || |||||| |||||||||| |
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| T |
47857624 |
agcattacggctatccaaaatctgaatcagataagtgggtatcctgcatcagagttcttgatccaaggacaggaaatacgacatgtcttctggagcttca |
47857723 |
T |
|
| Q |
101 |
ggatattgaggctgcattcagcgtatgcacagtaaattttcatgataaagaatacggaactcttttagccgttggcacagcaaagggactgcaatttacg |
200 |
Q |
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||| | |||||||||||||||| ||||||| |||||||||||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
47857724 |
ggagaatgaggctgcattcagcatatgcaccgtaaattttcatgacaaggagtacggaacccttttagctgttggcacagcaaaggggctgcagtttaca |
47857823 |
T |
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| Q |
201 |
cccagaaggagtttaactgctggatttattcatatatataggtttctagaggatgg |
256 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
47857824 |
cccaaaaggagtttaactgttggatttattcatatatataggtttctagatgatgg |
47857879 |
T |
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