View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6105_low_4 (Length: 242)
Name: NF6105_low_4
Description: NF6105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6105_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 36940515 - 36940702
Alignment:
| Q |
9 |
gaagaaaataactctgaatcaagaacaaaaacggtgaagaagtttggtaaagaagatgcagaagttgatttaaagttctaaaatattgaacccaaatatg |
108 |
Q |
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| T |
36940515 |
gaagaaaataactctgaatcaagaacaaaaacggtgaagaagtttgataaagaagatgcagaagctgatttaaagatccaaaatattgaacccaaatttg |
36940614 |
T |
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| Q |
109 |
taaatattaaaacccaacttcaatttgtatttaagaatgttaaaaattgtccaccattaaaatttatgattcaacaattttctgcatg |
196 |
Q |
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| T |
36940615 |
taaatattaaaacccaacttcaatttgtatttaagaatgttaaaaattgtccaccattaaaatttctgattcaacaattttctgcatg |
36940702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 43458443 - 43458332
Alignment:
| Q |
88 |
aaaatattgaacccaaatatgtaaatattaaaacccaacttcaatttgtattta--agaatgttaa--aaattgtccaccattaaaatttatgattcaac |
183 |
Q |
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| T |
43458443 |
aaaatattgaactcaaatttgtaaaaattgaaacccaacttctatttgtagttaggaaaatgtgaaagaaattgtccaccatcaaaatttgtgattcaat |
43458344 |
T |
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| Q |
184 |
aattttctgcat |
195 |
Q |
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| T |
43458343 |
aattttctgcat |
43458332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 43458513 - 43458457
Alignment:
| Q |
10 |
aagaaaataactctgaatcaagaacaaaaacggtgaagaagtttggtaaagaagatg |
66 |
Q |
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|||||||||||| |||||||||||||||| | ||||| |||||||||||||||| |
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| T |
43458513 |
aagaaaataactttgaatcaagaacaaaattgaaaaagaactttggtaaagaagatg |
43458457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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