View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6105_low_5 (Length: 217)
Name: NF6105_low_5
Description: NF6105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6105_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2816683 - 2816483
Alignment:
| Q |
1 |
cagaggatttgaattgttgctatgaattcttcttcactgtatgagcattacaataattagaatctcaagtattgaatatgcaaaacttggacaaacaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2816683 |
cagaggatttgaattgttgctatgaattcttcttcactgtatgagcattacaataattagaatctcaagtattgaatatgcaaaacttggaccaacaaag |
2816584 |
T |
|
| Q |
101 |
atcaaagctccatttttgtacatatgaaatgaaattatatatcatgtgattatgtatgaggttatttttctaataaaatactccatttttgaagaaatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816583 |
atcaaagctccatttttgtacatatgaaattaaattatatatcatgtgattatgtatgaggttatttttctaataaaatactccatttttgaagaaatac |
2816484 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
2816483 |
c |
2816483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 1423610 - 1423723
Alignment:
| Q |
4 |
aggatttgaattgttgctatgaa---ttcttcttcactgtatgagcattacaataattagaa-tctcaa-gtattgaatatgcaaaacttggacaaacaa |
98 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||||| | |||||||||||| ||| || | |||||||||||||||||||||| || || |
|
|
| T |
1423610 |
aggatttgaattgttgcaatgaccgtttcttcttcagtgtatgagcactgcaataattagaaatcttaaagcattgaatatgcaaaacttggaccaagaa |
1423709 |
T |
|
| Q |
99 |
agatcaaagctcca |
112 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
1423710 |
agatcaaagatcca |
1423723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 1425659 - 1425748
Alignment:
| Q |
112 |
atttttgtacatatgaaatgaaattatatatcatgtgattatgtatgaggttatttttctaataaaatactccattt----ttgaagaaatacc |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
1425659 |
atttttgtatatatgaaatgaaattatatatcatgtgattatgt----ggttattgttctaataaaagattccatttgtttttgaagaaatacc |
1425748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University