View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6106_high_2 (Length: 437)
Name: NF6106_high_2
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6106_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 45381853 - 45382251
Alignment:
| Q |
13 |
aatattcaaacattgctttctttgccataagtataacatgaaacttgattcacatttggnnnnnnncataactactattacgatcacccacatgatcaat |
112 |
Q |
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| T |
45381853 |
aatattcaaacattgctttctttgccataagtataacatgaaacttgattcacatttggtttttttcataactactattaagatcacccacatgatcaat |
45381952 |
T |
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| Q |
113 |
cgtcggatttgttgttttaagttctaactaacataaagcatgtatgaactaaagaaatggaaaatattttttaggaaactgctctaaatcatgttacaag |
212 |
Q |
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| T |
45381953 |
cgtcggatttgttgttttaagttctaactaacataaagcatgtatgaactaaagaaatggaaaatattttttaggaaactgctctaaatcatgttacaag |
45382052 |
T |
|
| Q |
213 |
ttctgggataggaggagatggatttggagctacccgcgagatgagcctaaggaaactcatttgggttgttactcgtattcaagttcaagtacagagatat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382053 |
ttctgggataggaggagatggatttggagctacccgcgagatgagcctaaggaaactcatttgggttgttactcgtattcaagttcaagtacagagatat |
45382152 |
T |
|
| Q |
313 |
aacaaatggtaaacacatccatgagatgcttctagcccctaccttgcataattatacataattgtttgtgagttgtaaacacaaaacgataaatttgaca |
412 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45382153 |
aacaaatggtaaacacatccatg----------agcccctaccttgcataattatacataattgttagtgagttgtaaacacaaaacgataaatttgaca |
45382242 |
T |
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