View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6106_high_5 (Length: 318)
Name: NF6106_high_5
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6106_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 10309725 - 10309426
Alignment:
| Q |
1 |
ttgtcggcacaatatattaacccagggtatgcaaccgagaaaacatagttcataccgagtgctgtgcagctagcttactcaaaatatttttcattgctaa |
100 |
Q |
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| T |
10309725 |
ttgtcggcacaatatattaacccagtgtatgcaaccgagaaaacatagttcataccgagtgctgtgcagctagcttactcaaaatatttttcattgctaa |
10309626 |
T |
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| Q |
101 |
aacactattgttagtatatcctttgtgatagttagtgttatttctatttactctgaaatctgcaagattccgatttccttgtgaatttcacctaaatatt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10309625 |
aacactattgttagtatatcctgtgtgatagttagtgttatttctatttactctgaaatctgcaagattccgatttccttgtgaatttcacctaaatatt |
10309526 |
T |
|
| Q |
201 |
atgatagttcaatcca--nnnnnnnnatttcctaattacgcctctatccagcctccttagtcttttgatatgtttgtgtatcgaacgataaatgaagttc |
298 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10309525 |
atgatagttcaatccattttttttttatttcctaattatgcctctatccagcctcctttgtcttttgatatgtttgtgtatcgaacgataaatgaagttc |
10309426 |
T |
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