View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6106_high_7 (Length: 252)
Name: NF6106_high_7
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6106_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2441670 - 2441429
Alignment:
| Q |
1 |
tgtaattatcattaaaagaatcatagccaaagccaaatgccatgtgagtgaaactccaatttggcttttgaaataggggaaactccttaatttttctaat |
100 |
Q |
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| T |
2441670 |
tgtaattatcattaaaagaatcatagccaaagccaaacgccatgtgagtgaaactccaatttggcttttgaaataggggaaactccttaatttttctaat |
2441571 |
T |
|
| Q |
101 |
ggaagggttccataatatgacagactttttataaataccagcagtaaaacaaagtatgccattgcaggagccaacgaagcaatctacacataacctagga |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441570 |
ggaagggttccataatatgacagagattttataaataccagcagtaaaacaaagtatgccattgcaggagccaacgaagcaatctacacataacctagga |
2441471 |
T |
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| Q |
201 |
tgatctccatgaatattatacggagaatactcatactctgtg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441470 |
tgatctccatgaatattatacggagaatactcatactctgtg |
2441429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3754255 - 3754219
Alignment:
| Q |
1 |
tgtaattatcattaaaagaatcatagccaaagccaaa |
37 |
Q |
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|||||||||| || ||||||||||||||||||||||| |
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| T |
3754255 |
tgtaattatcgtttaaagaatcatagccaaagccaaa |
3754219 |
T |
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